Non-Coding RNA Search

Ss1.1-rret19_b2.5

Sequence:


               
               GGCAGCCGCGGGAGCGGCCAGCCGGTGGTGACGCCGGGAACCGTGGGGAGGGAGGCTGCG
CTTGTAGCCGCTGGAGGGAGGTGATGCGACCGGGGGCGCTCCGGGCCAACCAGGAGGGTC
CTGGATCTGGGAAGTCTGTTAGTTGTTGTCTCAGAGTTCAGCAACAGCGACAACAAACTC
TTATAGCTTCAGAAACGCCGACCTGCTGTGCATCAGGTGGGACTATATATATATATATTT
TTTGTCTATCTGGGTTTTTTGGTTTTTTTGTTTTTGCCAAAATTGCAAAATTCTAAATGT
AAAGCCCTCAGTATCAACTCTTCTACCTTCACAAGGCTCTACACACACAGATACACACAG
ACACCCACCCACACACACAGACACAGACACAAACGATAGGACGGGCTCTAGCCAGACCTC
TCAGTAAAATGACTTGAACATCAGCTGTACAAGAAAAGTATTCTACCTTCACACACACAA
AATTTTTTTAAAAAGACTATTGAACTAAAAACAGTCAACTGTTTACGTATAATGTTAAAT
TCAGGAGTTCAGTGTTTTACTAATATAACCTGTTTTGAAACCTCTTGTTCAAAACAAAAT
GTTTTGAGCAATCAACCAAAATTGTTCATTTTCTTTTCCTGTAGATGTTCTGACAGATTT
GCAGGGCTCACAGCTCACTGTGCTAGTATGTAAAAAGGTGTTGTTTACACAAGGCAAAGA
GAAAACATGATATTCAGAAATTTGCCAAATAGAATAATTATAGCACAAATACTGTAAAGG
TGCCTGGCACCACAACTTGAGAACGTGTTAAAAAAAAAAAGTGTTACAAGGTTTAAAAAA
AAAAAAACATCTTTGCTAATTTTTAGTCCTGTTGAACATTCATGGAATTGTTAATATGAC
TTATATAGACCCACACAGGTTTTATTTTTGTGTCTTTAAAATAAAAGTCCAAAATATTTA
AATTTTATGGTCAAATATGCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCCGCGGGAGCGGCCAGCCGGTGGTGACGCCGGGAACCGTGGGGAGGGAGGCTGCG
CTTGTAGCCGCTGGAGGGAGGTGATGCGACCGGGGGCGCTCCGGGCCAACCAGGAGGGTC
CTGGATCTGGGAAGTCTGTTAGTTGTTGTCTCAGAGTTCAGCAACAGCGACAACAAACTC
TTATAGCTTCAGAAACGCCGACCTGCTGTGCATCAGGTGGGACTATATATATATATATTT
TTTGTCTATCTGGGTTTTTTGGTTTTTTTGTTTTTGCCAAAATTGCAAAATTCTAAATGT
AAAGCCCTCAGTATCAACTCTTCTACCTTCACAAGGCTCTACACACACAGATACACACAG
ACACCCACCCACACACACAGACACAGACACAAACGATAGGACGGGCTCTAGCCAGACCTC
TCAGTAAAATGACTTGAACATCAGCTGTACAAGAAAAGTATTCTACCTTCACACACACAA
AATTTTTTTAAAAAGACTATTGAACTAAAAACAGTCAACTGTTTACGTATAATGTTAAAT
TCAGGAGTTCAGTGTTTTACTAATATAACCTGTTTTGAAACCTCTTGTTCAAAACAAAAT
GTTTTGAGCAATCAACCAAAATTGTTCATTTTCTTTTCCTGTAGATGTTCTGACAGATTT
GCAGGGCTCACAGCTCACTGTGCTAGTATGTAAAAAGGTGTTGTTTACACAAGGCAAAGA
GAAAACATGATATTCAGAAATTTGCCAAATAGAATAATTATAGCACAAATACTGTAAAGG
TGCCTGGCACCACAACTTGAGAACGTGTTAAAAAAAAAAAGTGTTACAAGGTTTAAAAAA
AAAAAAACATCTTTGCTAATTTTTAGTCCTGTTGAACATTCATGGAATTGTTAATATGAC
TTATATAGACCCACACAGGTTTTATTTTTGTGTCTTTAAAATAAAAGTCCAAAATATTTA
AATTTTATGGTCAAATATGCAGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               711-859, - strand, RNAz p=0.842309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               711-859, - strand, RNAz p=0.842309

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr19 (7807500-7806534)
               

               
               1-984, gnl|Hg17|chr17 (32374885-32375856)
               

               
               1-984, gnl|Mm7|chr11 (84589104-84588054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr19 (7807500-7806534)
               

               
               1-984, gnl|Hg17|chr17 (32374885-32375856)
               

               
               1-984, gnl|Mm7|chr11 (84589104-84588054)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               ret (0.128733)

	1-984, gnl\|bosTau2\|chr19 (7807500-7806534)
	1-984, gnl\|Hg17\|chr17 (32374885-32375856)
	1-984, gnl\|Mm7\|chr11 (84589104-84588054)