Non-Coding RNA Search

Ss1.1-rret19_c11.5

Sequence:


               
               GTAGGACAGGAGAGAACACATGTCCTACTACAAAGACATTCACATTCAGATTTGCAAACA
TTGTGATAGCCAAGCAAATGTGTCTGCCAGCAGCTTTCAGTCCCAAAGCAATAGTTTGGG
ACCTCTGAATCAGAGCCTACCAGGATCATATTCTTGATTCCAACTTAGGGAGTGTATACA
CAAAATACACTGAAAATTGAGGTGGGAGGGAAAGGAACTCACCCTATTCAGGGTTATTTC
TCTTCTCCCAAATGATATGTGTGTGTATGTTTGCTAGCTGCATCATTCTGGACCCACATG
TAGGGTCTTTCTGAGGGAGATTCAGAAGAAGAGTAACATAGCATAGTATCAAGGCTTATC
TGCTTCCTGTCACTACAGTGTCTGACCTGAGTTTATATTGCTGCTCTTGCTGTGCAAAAC
AGTACATGCAGTATACTGTACTCATAGCCATTTCATAATACATATCTTAGATTCTCATTT
GTACACATTCTAACCATAGTTTATAATGGGGAAGATTATTCAAATATCATTTTTGAACAA
ATTCCTATAAATAAAACAATTTTGCAATGGGGTTTCTTAAAGGTATACACATCTTTTCCT
TCTTGGTGTATAGATAGACAGCGGTTTACATATCTATCAGCATTATAAATATATATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGACAGGAGAGAACACATGTCCTACTACAAAGACATTCACATTCAGATTTGCAAACA
TTGTGATAGCCAAGCAAATGTGTCTGCCAGCAGCTTTCAGTCCCAAAGCAATAGTTTGGG
ACCTCTGAATCAGAGCCTACCAGGATCATATTCTTGATTCCAACTTAGGGAGTGTATACA
CAAAATACACTGAAAATTGAGGTGGGAGGGAAAGGAACTCACCCTATTCAGGGTTATTTC
TCTTCTCCCAAATGATATGTGTGTGTATGTTTGCTAGCTGCATCATTCTGGACCCACATG
TAGGGTCTTTCTGAGGGAGATTCAGAAGAAGAGTAACATAGCATAGTATCAAGGCTTATC
TGCTTCCTGTCACTACAGTGTCTGACCTGAGTTTATATTGCTGCTCTTGCTGTGCAAAAC
AGTACATGCAGTATACTGTACTCATAGCCATTTCATAATACATATCTTAGATTCTCATTT
GTACACATTCTAACCATAGTTTATAATGGGGAAGATTATTCAAATATCATTTTTGAACAA
ATTCCTATAAATAAAACAATTTTGCAATGGGGTTTCTTAAAGGTATACACATCTTTTCCT
TCTTGGTGTATAGATAGACAGCGGTTTACATATCTATCAGCATTATAAATATATATAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-279, + strand, RNAz p=0.726325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-279, + strand, RNAz p=0.726325

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-660, gnl|bosTau2|chr9 (4823052-4823705)
               

               
               3-660, gnl|Hg17|chr9 (70374363-70373709)
               

               
               3-660, gnl|Mm7|chr19 (22692720-22693360)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-660, gnl|bosTau2|chr9 (4823052-4823705)
               

               
               3-660, gnl|Hg17|chr9 (70374363-70373709)
               

               
               3-660, gnl|Mm7|chr19 (22692720-22693360)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)

	3-660, gnl\|bosTau2\|chr9 (4823052-4823705)
	3-660, gnl\|Hg17\|chr9 (70374363-70373709)
	3-660, gnl\|Mm7\|chr19 (22692720-22693360)