Non-Coding RNA Search

Ss1.1-rret19_e6.5.5

Sequence:


               
               TTCATTAAATCGCTGGGACGCCTAGCGGGCATCCCTCCCGGCAAGCGAGCTTGGCGCAGG
GAAAGGAGACCTCGGGCTCCAGGGGCCTAGCAGCCTCTTCTTCCGGGCGTCCCGGGCTGC
CCTCACTCTCAGTCCCCGCCGTCTCATTTGTCGCCTTCCGACGCATGACCCCGTCGCGCT
CGCGTCCCAGGCCGGTGACAGGCGCAGGGTGCGCCAAGCGGTCCCATGTGCCCCTTCCCT
CTCGCGGCCGCTGCAGTCGCCGCGCCCCGAACCCCGCTCCGGCTCCTGGGCAGAAGGCTC
GCCGCTGCCATGTCTACCGCCAGGCCACTCAAATCCGTGGACTATGAAGTGTTCGGGAGA
GTGCAGGGTGTTTGCTTCAGAATGTACACTGAAGATGAAGCTAGGAAAATAGGAGTGGTT
GGCTGGGTGAAGAATACCAGCAAAGGCACTGTGACAGGCCAAGTGCAAGGCCCTGAAGAG
AAAGTCAATTCCATGAAGTCCTGGCTGAGCAAGATTGGAAGTCCTAGTTCTCGAATTGAC
CGCACAAACTTTTCTAATGAAAAAACCATCTCTAAACTTGAATACTCGAATTTTAGTATT
CGATATTGATAGGAGAGAAATTATACTACACAATAGACATATGTGTTCTTCAGCCTACAC
ACTAGAATAATAGTAGCAGAGTAGGGCAATAAAGGAAATTTGTTCTGAAAGCTATAACAT
ATGTTACATTATATGTGACACTGAAATAGTTTTACTCAACTTTGTTTTTAACAAGCCAAA
ACTTAGCATTATAAAATTTAAAATGTCATTATACAGTATTTAAGCAGTATAAAATTTAAA
ATGTCATTATACAGTATTTAACATGAATATATAAATTAAACTTGTCTCATGGGATCTTTA
ATGAATATTATGGCATACATGTTATTTGGCTGTACCTAAACTAATAAAGTTAATCACTTA
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATTAAATCGCTGGGACGCCTAGCGGGCATCCCTCCCGGCAAGCGAGCTTGGCGCAGG
GAAAGGAGACCTCGGGCTCCAGGGGCCTAGCAGCCTCTTCTTCCGGGCGTCCCGGGCTGC
CCTCACTCTCAGTCCCCGCCGTCTCATTTGTCGCCTTCCGACGCATGACCCCGTCGCGCT
CGCGTCCCAGGCCGGTGACAGGCGCAGGGTGCGCCAAGCGGTCCCATGTGCCCCTTCCCT
CTCGCGGCCGCTGCAGTCGCCGCGCCCCGAACCCCGCTCCGGCTCCTGGGCAGAAGGCTC
GCCGCTGCCATGTCTACCGCCAGGCCACTCAAATCCGTGGACTATGAAGTGTTCGGGAGA
GTGCAGGGTGTTTGCTTCAGAATGTACACTGAAGATGAAGCTAGGAAAATAGGAGTGGTT
GGCTGGGTGAAGAATACCAGCAAAGGCACTGTGACAGGCCAAGTGCAAGGCCCTGAAGAG
AAAGTCAATTCCATGAAGTCCTGGCTGAGCAAGATTGGAAGTCCTAGTTCTCGAATTGAC
CGCACAAACTTTTCTAATGAAAAAACCATCTCTAAACTTGAATACTCGAATTTTAGTATT
CGATATTGATAGGAGAGAAATTATACTACACAATAGACATATGTGTTCTTCAGCCTACAC
ACTAGAATAATAGTAGCAGAGTAGGGCAATAAAGGAAATTTGTTCTGAAAGCTATAACAT
ATGTTACATTATATGTGACACTGAAATAGTTTTACTCAACTTTGTTTTTAACAAGCCAAA
ACTTAGCATTATAAAATTTAAAATGTCATTATACAGTATTTAAGCAGTATAAAATTTAAA
ATGTCATTATACAGTATTTAACATGAATATATAAATTAAACTTGTCTCATGGGATCTTTA
ATGAATATTATGGCATACATGTTATTTGGCTGTACCTAAACTAATAAAGTTAATCACTTA
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|113325|sp|P00819|ACYP2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|113325|sp|P00819|ACYP2_PIG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               61-369, gnl|bosTau2|chr11 (27623746-27623437)
               

               
               61-369, gnl|Hg17|chr2 (54254238-54254546)
               


               
               495-861, gnl|bosTau2|chr11 (26205781-26206171)
               

               
               495-861, gnl|Hg17|chr2 (54443476-54443861)
               

               
               495-861, gnl|Mm7|chr11 (30458445-30458084)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-369, gnl|bosTau2|chr11 (27623746-27623437)
               

               
               61-369, gnl|Hg17|chr2 (54254238-54254546)
               


               
               495-861, gnl|bosTau2|chr11 (26205781-26206171)
               

               
               495-861, gnl|Hg17|chr2 (54443476-54443861)
               

               
               495-861, gnl|Mm7|chr11 (30458445-30458084)

Expressed library(ies): 41 entry(ies)

More info

Expressed library(ies): 41 entry(ies)

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               bfe (3.59658)
               

               
               isp (3.00752)
               

               
               vin (1.99534)
               

               
               spc (1.58712)
               

               
               mgp (1.38408)
               

               
               cbe (1.19617)
               

               
               ste (1.08167)
               

               
               fco (0.628832)
               

               
               sme (0.610874)
               

               
               ldo (0.582016)
               

               
               ssp (0.542079)
               

               
               pro (0.512033)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               ton (0.351)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (3.59658)
               

               
               isp (3.00752)
               

               
               vin (1.99534)
               

               
               spc (1.58712)
               

               
               mgp (1.38408)
               

               
               cbe (1.19617)
               

               
               ste (1.08167)
               

               
               fco (0.628832)
               

               
               sme (0.610874)
               

               
               ldo (0.582016)
               

               
               ssp (0.542079)
               

               
               pro (0.512033)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               ton (0.351)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	61-369, gnl\|bosTau2\|chr11 (27623746-27623437)
	61-369, gnl\|Hg17\|chr2 (54254238-54254546)

	495-861, gnl\|bosTau2\|chr11 (26205781-26206171)
	495-861, gnl\|Hg17\|chr2 (54443476-54443861)
	495-861, gnl\|Mm7\|chr11 (30458445-30458084)

	bfe (3.59658)
	isp (3.00752)
	vin (1.99534)
	spc (1.58712)
	mgp (1.38408)
	cbe (1.19617)
	ste (1.08167)
	fco (0.628832)
	sme (0.610874)
	ldo (0.582016)
	ssp (0.542079)
	pro (0.512033)
	nms (0.427716)
	hea (0.408998)
	che (0.408942)
	sug (0.381874)
	cmu (0.372787)
	ton (0.351)
	fat (0.294855)
	cga (0.279096)
	fce (0.271592)
	lyg (0.266205)
	mas (0.210305)
	col (0.195008)
	mgm (0.180343)
	sto (0.179824)
	fhi (0.169578)
	cje (0.165235)
	mga (0.160205)
	cli (0.152812)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)