Non-Coding RNA Search

Ss1.1-rret19_j4.5

Sequence:


               
               ACTTGTTAAAGAAAGCATTTCACGGGAGCATATGAGGGATGTGTAGACTTATATTGTTTA
GTATTTATTTTAGCCTCAATACTTGTTTTTAAATTTTTACATTGCATTATTTATTTCTTT
AGTTCCTGAATAATGGTTGTCGTTACTGTGACTGTATATTTTGAAGTGTGAAGTTATAAA
ATAGGAGAGTTCACCTCCGTTTTTCCTTGATTCCTCTTCTTTCTCAACTGTGTGATTATA
AGTCTGTCAATAAAATATTTAACCTCAAGAAGGTCAGAACTAAAATAAAATTAGAAAGCT
TATTTACCAAATTAGACAATTGATTCCATTAAAATAAGAAGTGAGAAAAACAGTGGTGGG
CACTGAGGTGTAAATTTTGCCCAGATGTATACCCAGCGTGAAAAATCTTCTAGTAAAAAT
ATATTTGACTCCCTACACATGTTGTAGAGGCAAATATGCCCTGTTGTGTAGAACTTGGTG
GGGGGAGGGGAGCGTTTTCAAAAGTGGTGAGTGGCCTTGATGACTGCTGAAGTCCTCAGT
GATCAGCACAGAAGCCTGTTCTGATAGCTCCAGGCTCCCTTGTTCTGGATGCTCATGTCT
GTGCTTCAGGTACTGCTGGATCTAGCCAGCTTGAGTCACCCTTGTACAAGCTTGTCTTTT
CTGTCTTGTGAATGTCTTTGATAATTAAAAAATAAAAATATGTGGCTCTCTGCAGTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGTTAAAGAAAGCATTTCACGGGAGCATATGAGGGATGTGTAGACTTATATTGTTTA
GTATTTATTTTAGCCTCAATACTTGTTTTTAAATTTTTACATTGCATTATTTATTTCTTT
AGTTCCTGAATAATGGTTGTCGTTACTGTGACTGTATATTTTGAAGTGTGAAGTTATAAA
ATAGGAGAGTTCACCTCCGTTTTTCCTTGATTCCTCTTCTTTCTCAACTGTGTGATTATA
AGTCTGTCAATAAAATATTTAACCTCAAGAAGGTCAGAACTAAAATAAAATTAGAAAGCT
TATTTACCAAATTAGACAATTGATTCCATTAAAATAAGAAGTGAGAAAAACAGTGGTGGG
CACTGAGGTGTAAATTTTGCCCAGATGTATACCCAGCGTGAAAAATCTTCTAGTAAAAAT
ATATTTGACTCCCTACACATGTTGTAGAGGCAAATATGCCCTGTTGTGTAGAACTTGGTG
GGGGGAGGGGAGCGTTTTCAAAAGTGGTGAGTGGCCTTGATGACTGCTGAAGTCCTCAGT
GATCAGCACAGAAGCCTGTTCTGATAGCTCCAGGCTCCCTTGTTCTGGATGCTCATGTCT
GTGCTTCAGGTACTGCTGGATCTAGCCAGCTTGAGTCACCCTTGTACAAGCTTGTCTTTT
CTGTCTTGTGAATGTCTTTGATAATTAAAAAATAAAAATATGTGGCTCTCTGCAGTTTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-691, gnl|bosTau2|chr9 (42988599-42989301)
               

               
               1-691, gnl|Hg17|chr6 (135647531-135646833)
               

               
               1-691, gnl|Mm7|chr10 (20805772-20806460)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-691, gnl|bosTau2|chr9 (42988599-42989301)
               

               
               1-691, gnl|Hg17|chr6 (135647531-135646833)
               

               
               1-691, gnl|Mm7|chr10 (20805772-20806460)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	1-691, gnl\|bosTau2\|chr9 (42988599-42989301)
	1-691, gnl\|Hg17\|chr6 (135647531-135646833)
	1-691, gnl\|Mm7\|chr10 (20805772-20806460)

	cbe (0.478469)
	hyp (0.42851)
	hea (0.204499)
	sto (0.179824)
	rec (0.17307)
	nco (0.161734)
	fco (0.157208)
	ret (0.128733)
	sug (0.127291)
	eru (0.120048)