Non-Coding RNA Search

Ss1.1-rret19_m2.5

Sequence:


               
               GAGAGAGAGAACTAGTCTCGGTTTTTTTTTTTTTTTTTTCCATGTTATGATTCAGCTTTA
TTTTATGATAATAGTGTTTTAATAATTAACAAATGCATAAATATATATTTACATGAGAAT
CTCAAAAATAATGATTCCTGTTATAGTTACTGTTACACTTCATCAGCATTTTCTCTGTGA
TCTGGATCCAACGGCGCCTCCATATGCCTATTACCAAGGTTTAATCGTTACTAACATGTT
GCCATATTTGCTCTTCTATTTTTTGGTGAAGTATTTTTCAAATAAATCTAAGACATCATG
ACATTTGACCCCTGAATACTTCAGAATGCACTGCAAAAGAATAAGGAAAATGTCCTGTGT
AACTACAATTCTATCACTCCCAACAAAATTAACAGTAATTCCTTAGTATCATGTAATACC
CAAGCCATTCAAATTTCCCTGCCTATTCCCAACAAATGATCTTTGCAGCTTATTCCTCTG
AATAAGGATCTAATCAAATCCTGCATGTTGAAAAGGAAGTTGTAGTTGGTTTTGATCACG
TGATGTTTATCTAATTCCACAATCAAGTGTGGGTTAAGAAGAAAATGCTTATGAAACATA
AGTGTTAGAAAGCCGTAAATTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGAGAACTAGTCTCGGTTTTTTTTTTTTTTTTTTCCATGTTATGATTCAGCTTTA
TTTTATGATAATAGTGTTTTAATAATTAACAAATGCATAAATATATATTTACATGAGAAT
CTCAAAAATAATGATTCCTGTTATAGTTACTGTTACACTTCATCAGCATTTTCTCTGTGA
TCTGGATCCAACGGCGCCTCCATATGCCTATTACCAAGGTTTAATCGTTACTAACATGTT
GCCATATTTGCTCTTCTATTTTTTGGTGAAGTATTTTTCAAATAAATCTAAGACATCATG
ACATTTGACCCCTGAATACTTCAGAATGCACTGCAAAAGAATAAGGAAAATGTCCTGTGT
AACTACAATTCTATCACTCCCAACAAAATTAACAGTAATTCCTTAGTATCATGTAATACC
CAAGCCATTCAAATTTCCCTGCCTATTCCCAACAAATGATCTTTGCAGCTTATTCCTCTG
AATAAGGATCTAATCAAATCCTGCATGTTGAAAAGGAAGTTGTAGTTGGTTTTGATCACG
TGATGTTTATCTAATTCCACAATCAAGTGTGGGTTAAGAAGAAAATGCTTATGAAACATA
AGTGTTAGAAAGCCGTAAATTAAT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               199-494, gnl|bosTau2|chr16 (50171050-50171350)
               

               
               199-494, gnl|Hg17|chr1 (208038033-208037739)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-494, gnl|bosTau2|chr16 (50171050-50171350)
               

               
               199-494, gnl|Hg17|chr1 (208038033-208037739)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.128733)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               pgl (0.118483)

	199-494, gnl\|bosTau2\|chr16 (50171050-50171350)
	199-494, gnl\|Hg17\|chr1 (208038033-208037739)