Non-Coding RNA Search

Ss1.1-rret19_o16.5

Sequence:


               
               TTTTTTTTTTTTATATGAAGGATCTTTTATTGATTTTCATACTTTCAAAGCAATGTAATA
GCTGCTTTAGTTTTTCTTCTTCTTATTGGGAGGCATATATATAATTTGAGTTAAATTCTT
AATTCCCTCCCTCCCCCTGCAACTCCCAGGGAAATTACATTGAATATTCAGGGGATCCAC
TACAGGATTTCACACTAATGAGATTCTTGGATCGATTTGTATACCGAAACCCAAAGCCAC
ATAAAGGCAAAGGTATGCTTCCATTTGATGAATTTTTCAGTTGTTCCACTATTCAAATTT
AATAAACAACATGAGGTTTTACATTACACTGTCTTGATTTTACATTTCAGAAAACACAGA
AAGTGTTGTGATGCAGCCAAAAAGAAAACATTTTATGAAGGATATTCGTAGTCTTGCTGG
TAAGTATAAAGCCTAGATGGTTGAAACTGACGGCTGAACAAGTTAGTAACACATTGTGTT
ATTCTTTGCTCTACTTTATCAGAATAAAACCTAAGCAGCAGAGAGATTGTCCATCTTTGT
TCTCAAGGATATATGCATTTTCAAGTTTAAATTTAGTTGATAACCTACTTTTACAGGTAT
TTTGTACCTAAGTGGCTCTGATTCTCTTTGTATTCAAAGCAGACATTTGTTCACATACTA
GATCCCAGCTCCTTTTTCTTCAGATTCTAAAGTTCATTATAAGTCATTTACTTTATAACT
GACTTATATCACAGAAGTCCAGAGACATAAAAGGACTCACCCACAGTTAGTAGAATTAAA
ATTAGAAGCCAAGTACCCTTTTAATCAAGATGAGTCCGAAATGTTTATTCTGAGGAGGAA
ACACTAATATTCTTATAGATTCAGTTCCTTATTCTTACTTTAGTTTTCCTTAGTGTTAAG
TAAAATTGTAGCTACTTCTGTTTACCTTTACTTTCTTTTCCAGTATACCAGGCATTATTG
TCATTTTTCCCAAGATGAAAATGACAAGTCTAAAGTGATTATTAAGAGACTTTTTGGGAG
TTCCTGTCGTGGTGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGAGTTTGA
TCTCTGCCCTTGCTCAGTGGGTTAATGATCCGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTATATGAAGGATCTTTTATTGATTTTCATACTTTCAAAGCAATGTAATA
GCTGCTTTAGTTTTTCTTCTTCTTATTGGGAGGCATATATATAATTTGAGTTAAATTCTT
AATTCCCTCCCTCCCCCTGCAACTCCCAGGGAAATTACATTGAATATTCAGGGGATCCAC
TACAGGATTTCACACTAATGAGATTCTTGGATCGATTTGTATACCGAAACCCAAAGCCAC
ATAAAGGCAAAGGTATGCTTCCATTTGATGAATTTTTCAGTTGTTCCACTATTCAAATTT
AATAAACAACATGAGGTTTTACATTACACTGTCTTGATTTTACATTTCAGAAAACACAGA
AAGTGTTGTGATGCAGCCAAAAAGAAAACATTTTATGAAGGATATTCGTAGTCTTGCTGG
TAAGTATAAAGCCTAGATGGTTGAAACTGACGGCTGAACAAGTTAGTAACACATTGTGTT
ATTCTTTGCTCTACTTTATCAGAATAAAACCTAAGCAGCAGAGAGATTGTCCATCTTTGT
TCTCAAGGATATATGCATTTTCAAGTTTAAATTTAGTTGATAACCTACTTTTACAGGTAT
TTTGTACCTAAGTGGCTCTGATTCTCTTTGTATTCAAAGCAGACATTTGTTCACATACTA
GATCCCAGCTCCTTTTTCTTCAGATTCTAAAGTTCATTATAAGTCATTTACTTTATAACT
GACTTATATCACAGAAGTCCAGAGACATAAAAGGACTCACCCACAGTTAGTAGAATTAAA
ATTAGAAGCCAAGTACCCTTTTAATCAAGATGAGTCCGAAATGTTTATTCTGAGGAGGAA
ACACTAATATTCTTATAGATTCAGTTCCTTATTCTTACTTTAGTTTTCCTTAGTGTTAAG
TAAAATTGTAGCTACTTCTGTTTACCTTTACTTTCTTTTCCAGTATACCAGGCATTATTG
TCATTTTTCCCAAGATGAAAATGACAAGTCTAAAGTGATTATTAAGAGACTTTTTGGGAG
TTCCTGTCGTGGTGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGAGTTTGA
TCTCTGCCCTTGCTCAGTGGGTTAATGATCCGGCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               114-233, + strand, RNAz p=0.852094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-233, + strand, RNAz p=0.852094

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               177-245, + strand, RNAmicro p=0.960051

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               177-245, + strand, RNAmicro p=0.960051

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               12-569, gnl|bosTau2|chr11 (18807557-18806974)
               

               
               12-569, gnl|Hg17|chr2 (37355347-37354780)
               

               
               12-569, gnl|Mm7|chr17 (77226872-77226358)
               


               
               697-861, gnl|bosTau2|chr11 (18804871-18804708)
               

               
               697-861, gnl|Hg17|chr2 (37354375-37354064)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-569, gnl|bosTau2|chr11 (18807557-18806974)
               

               
               12-569, gnl|Hg17|chr2 (37355347-37354780)
               

               
               12-569, gnl|Mm7|chr17 (77226872-77226358)
               


               
               697-861, gnl|bosTau2|chr11 (18804871-18804708)
               

               
               697-861, gnl|Hg17|chr2 (37354375-37354064)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               pro (0.512033)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	12-569, gnl\|bosTau2\|chr11 (18807557-18806974)
	12-569, gnl\|Hg17\|chr2 (37355347-37354780)
	12-569, gnl\|Mm7\|chr17 (77226872-77226358)

	697-861, gnl\|bosTau2\|chr11 (18804871-18804708)
	697-861, gnl\|Hg17\|chr2 (37354375-37354064)

	pro (0.512033)
	aor (0.390549)
	ret (0.3862)
	tra (0.369276)
	hea (0.204499)
	nlu (0.191681)
	sin (0.174948)
	rec (0.17307)
	nje (0.16592)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	spc (0.113366)