Non-Coding RNA Search

Ss1.1-rret20_h22.5

Sequence:


               
               ATGCAAATAAAGCTCCCCCAAAGGACCATAGGGATGAGCCAGCCTTGCCTTTTTTGTATG
GTTTTGTTTACACAACATTACTGGGACTTTTAAATTTAGGTATAGAGTTGGGAAAAAAGA
TTTCCATTTAGATGTTTTATATGGTTGATTATGTTTAAAATTACCATTACTTATTTTTTA
AAAGCACACAGCTATATATGTTTATGTATATCTACCTAAACTTTGTATCATGGTTTCAGT
GTATTGTTCATGTATTACTGGGACATGCTAACAAGAAATCAATCCAAAGAAAAATTTGAA
AGCATTCCTATTTATAGAATAAGTAATTGTTTCATTTATATAAAAGCAAAAGAACTTAGA
GTTCTAATAAAATGGGATATCTAATAAATTATGAAGTTACCCATTTGAATATATTATATT
TTTATAACTTTCCTTGCCAAAGTCCTGGGCTTATTAGTACATTAGAGAACTTGGCTTTTC
CCCCTCACCTCTACCATCCATTTGTCTCATTCATTCATTTGGGGCCTTTCACCTAAAGAG
AATCAAGAAATATAAAGGTGCAACAAGATTGGCAAAATATTTTCCAAAAAATGTTTTAAT
CACTAACATTTTGCTAATATTGAAGCATCATTTTGTGTTGAATTCTTTGACTAGATGTCA
ACAGTTGATAAATATCCCTATAATAAAGCCTAATGACCCATTTCAGAAAAGATGGAGCTG
GGCCTTCCTAGCAAATACAGCAGAGAAAAATCTGACCCAAAGAAGAGTCTGAATTTTGTA
TGGGGTAGTAAGAATGGCCAATTCCTTGTATATTCCAGCTTTGCAGGTACCATCCTAAAG
TGTGAAACAGGGTTGCAGCTCAAAGTTGCTATTCTTCCAGGATAGAAATGTTTTAGAATA
GAGTGTATTTTTTAAGTGAATATTCCATTAATTCATGTACACCCTTTCTTTTAAAGTTAG
AAACCTAACTGTATTCTAAACTTTGAATAGCTTTGTGCTAAACTTCAAATATGGAAGATC
ACAAAAATTAATATTTTCTTCCCTGAAACCAGAGTTTACATGTGTGTTTTCCCCATAAAA
TGTCCAGATAAATGTATTCAAGATGCAATACAGTATTTTAACATTCACATATCATTTTAT
ATTGAAATATATTACAGTATTAAAATTCAGTGTTCCGTATTTATTTCAGTATGCATTTTA
TTTAGTAAAAACCGAGAAAAATGTTTAATCCAATGGTGCCTTACTTAGTAATTTGAAAGA
AATTGACTTTTTATGTCTAAGTAGCAGATGATTTGCATATTTGTAAAAACCGTTAGGCCT
TTTATATTTTAACTTGTAATACCAATTTTGTTCTTTTAGTAGCAGAAATGTGATGACTGT
TAAAGTGCCCAAAATTTTGTGGCATGAAATTAATTTTTCCCTGTTTATAGTCAGAAACTG
TAAAGGAAGAAAAATGTTTTCATCCCACTGCATTACGTAAACATGCACATTTCGGTACTT
ATGTCATCAGGATAGTTTAAATGATGGGGTAGGGTCTACCCTAGACATCTGTGTCTTTGT
AAGTTAGTCAGACAATAAATAAAAGCAGAATGGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCAAATAAAGCTCCCCCAAAGGACCATAGGGATGAGCCAGCCTTGCCTTTTTTGTATG
GTTTTGTTTACACAACATTACTGGGACTTTTAAATTTAGGTATAGAGTTGGGAAAAAAGA
TTTCCATTTAGATGTTTTATATGGTTGATTATGTTTAAAATTACCATTACTTATTTTTTA
AAAGCACACAGCTATATATGTTTATGTATATCTACCTAAACTTTGTATCATGGTTTCAGT
GTATTGTTCATGTATTACTGGGACATGCTAACAAGAAATCAATCCAAAGAAAAATTTGAA
AGCATTCCTATTTATAGAATAAGTAATTGTTTCATTTATATAAAAGCAAAAGAACTTAGA
GTTCTAATAAAATGGGATATCTAATAAATTATGAAGTTACCCATTTGAATATATTATATT
TTTATAACTTTCCTTGCCAAAGTCCTGGGCTTATTAGTACATTAGAGAACTTGGCTTTTC
CCCCTCACCTCTACCATCCATTTGTCTCATTCATTCATTTGGGGCCTTTCACCTAAAGAG
AATCAAGAAATATAAAGGTGCAACAAGATTGGCAAAATATTTTCCAAAAAATGTTTTAAT
CACTAACATTTTGCTAATATTGAAGCATCATTTTGTGTTGAATTCTTTGACTAGATGTCA
ACAGTTGATAAATATCCCTATAATAAAGCCTAATGACCCATTTCAGAAAAGATGGAGCTG
GGCCTTCCTAGCAAATACAGCAGAGAAAAATCTGACCCAAAGAAGAGTCTGAATTTTGTA
TGGGGTAGTAAGAATGGCCAATTCCTTGTATATTCCAGCTTTGCAGGTACCATCCTAAAG
TGTGAAACAGGGTTGCAGCTCAAAGTTGCTATTCTTCCAGGATAGAAATGTTTTAGAATA
GAGTGTATTTTTTAAGTGAATATTCCATTAATTCATGTACACCCTTTCTTTTAAAGTTAG
AAACCTAACTGTATTCTAAACTTTGAATAGCTTTGTGCTAAACTTCAAATATGGAAGATC
ACAAAAATTAATATTTTCTTCCCTGAAACCAGAGTTTACATGTGTGTTTTCCCCATAAAA
TGTCCAGATAAATGTATTCAAGATGCAATACAGTATTTTAACATTCACATATCATTTTAT
ATTGAAATATATTACAGTATTAAAATTCAGTGTTCCGTATTTATTTCAGTATGCATTTTA
TTTAGTAAAAACCGAGAAAAATGTTTAATCCAATGGTGCCTTACTTAGTAATTTGAAAGA
AATTGACTTTTTATGTCTAAGTAGCAGATGATTTGCATATTTGTAAAAACCGTTAGGCCT
TTTATATTTTAACTTGTAATACCAATTTTGTTCTTTTAGTAGCAGAAATGTGATGACTGT
TAAAGTGCCCAAAATTTTGTGGCATGAAATTAATTTTTCCCTGTTTATAGTCAGAAACTG
TAAAGGAAGAAAAATGTTTTCATCCCACTGCATTACGTAAACATGCACATTTCGGTACTT
ATGTCATCAGGATAGTTTAAATGATGGGGTAGGGTCTACCCTAGACATCTGTGTCTTTGT
AAGTTAGTCAGACAATAAATAAAAGCAGAATGGTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               682-794, - strand, RNAz p=0.921314
               

               
               1377-1596, - strand, RNAz p=0.760795

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               682-794, - strand, RNAz p=0.921314
               

               
               1377-1596, - strand, RNAz p=0.760795

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1596, gnl|bosTau2|chr2 (14564278-14562683)
               

               
               1-1596, gnl|Hg17|chr2 (175251399-175249806)
               

               
               1-1596, gnl|Mm7|chr2 (73274855-73273333)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1596, gnl|bosTau2|chr2 (14564278-14562683)
               

               
               1-1596, gnl|Hg17|chr2 (175251399-175249806)
               

               
               1-1596, gnl|Mm7|chr2 (73274855-73273333)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               lin (1.16482)
               

               
               liv (1.02399)
               

               
               mgp (0.922722)
               

               
               tra (0.738552)
               

               
               spl (0.715922)
               

               
               lnt (0.426925)
               

               
               ret (0.3862)
               

               
               cbl (0.344392)
               

               
               fco (0.314416)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.16482)
               

               
               liv (1.02399)
               

               
               mgp (0.922722)
               

               
               tra (0.738552)
               

               
               spl (0.715922)
               

               
               lnt (0.426925)
               

               
               ret (0.3862)
               

               
               cbl (0.344392)
               

               
               fco (0.314416)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	682-794, - strand, RNAz p=0.921314
	1377-1596, - strand, RNAz p=0.760795

	1-1596, gnl\|bosTau2\|chr2 (14564278-14562683)
	1-1596, gnl\|Hg17\|chr2 (175251399-175249806)
	1-1596, gnl\|Mm7\|chr2 (73274855-73273333)

	lin (1.16482)
	liv (1.02399)
	mgp (0.922722)
	tra (0.738552)
	spl (0.715922)
	lnt (0.426925)
	ret (0.3862)
	cbl (0.344392)
	fco (0.314416)
	bla (0.248694)
	cbe (0.239234)
	sag (0.182715)
	ton (0.1755)
	rec (0.17307)
	ste (0.135208)
	pla (0.133672)
	jca (0.11396)
	spc (0.113366)