Non-Coding RNA Search

Ss1.1-rret20_l22.5

Sequence:


               
               TCCTCTTACTCGACCTAGTCTTTGCAAAAAATGGGAGGCAGCTGTCAGAAGAAAAAACTT
TAAGCCCACCAAGTATAGCAGCATTTGTTCAGAACATTTTACTCCAGACTGCTTCAAGAG
GGAGTGCAACAACAAGTTACTCAAAGAGGATGCTGTTCCCACGATATTTCTTTGTACTGA
CTGAACCACATGACAAGAAGATCTTCTGGAGCCACAGGAACAGCTCCCCCCACCTCCTCT
AACACCCCCCATTTCCCAGGTTGACGCTGCTATCGGATTACTCATGCCTCCTCTGCAGAC
CCCGGATAATCTCTCTGTGTTCTGTGACCACAACTATACTGTGGAGGACACCATGCACCA
GAGGAAAAGGATTCACCAGCTAGAGCAACAAGTTGAAAAACTCCGAAAGAAACTCAAGAC
TGCGCAGCAGCGATGCAGGAGGCAGGAGCGACAGCTGGAAAAGTTAAAGGAGGTTGTACA
CTTTCAGAAGGAGAAAGACGACGTCTCAGAGAGGGGTTATGTGATTCTACCAAATGACTA
TTTCGAAATAGTTGAAGTACCAGCGTGAAAAGTGAAATTTGTTATTGGGTTTTAATGGGG
CAATACCACATACCCTCTTCTAGCCTGTAGAGGAGTTTCATTTGAAAGAAATTACACTTG
ATTACTTGTATAAAAACAATTCAGAATATTTTTTTAAAAGAATAAATTAGATATATACTG
TAAAATTGTAAAAATTTTGGTTTGTAATTTCAGGGTTTTTACATTTTAACAAACTATTTT
CAGAGTTTTAAACTAACCTCAAAGCTTCAATGTAAGTTAGTTTCAAGATTGAGGATTTTT
GTTTTTTAATTTGAGTATTTATAGAAATGATATAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCTTACTCGACCTAGTCTTTGCAAAAAATGGGAGGCAGCTGTCAGAAGAAAAAACTT
TAAGCCCACCAAGTATAGCAGCATTTGTTCAGAACATTTTACTCCAGACTGCTTCAAGAG
GGAGTGCAACAACAAGTTACTCAAAGAGGATGCTGTTCCCACGATATTTCTTTGTACTGA
CTGAACCACATGACAAGAAGATCTTCTGGAGCCACAGGAACAGCTCCCCCCACCTCCTCT
AACACCCCCCATTTCCCAGGTTGACGCTGCTATCGGATTACTCATGCCTCCTCTGCAGAC
CCCGGATAATCTCTCTGTGTTCTGTGACCACAACTATACTGTGGAGGACACCATGCACCA
GAGGAAAAGGATTCACCAGCTAGAGCAACAAGTTGAAAAACTCCGAAAGAAACTCAAGAC
TGCGCAGCAGCGATGCAGGAGGCAGGAGCGACAGCTGGAAAAGTTAAAGGAGGTTGTACA
CTTTCAGAAGGAGAAAGACGACGTCTCAGAGAGGGGTTATGTGATTCTACCAAATGACTA
TTTCGAAATAGTTGAAGTACCAGCGTGAAAAGTGAAATTTGTTATTGGGTTTTAATGGGG
CAATACCACATACCCTCTTCTAGCCTGTAGAGGAGTTTCATTTGAAAGAAATTACACTTG
ATTACTTGTATAAAAACAATTCAGAATATTTTTTTAAAAGAATAAATTAGATATATACTG
TAAAATTGTAAAAATTTTGGTTTGTAATTTCAGGGTTTTTACATTTTAACAAACTATTTT
CAGAGTTTTAAACTAACCTCAAAGCTTCAATGTAAGTTAGTTTCAAGATTGAGGATTTTT
GTTTTTTAATTTGAGTATTTATAGAAATGATATAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61837259|ref|XP_614603.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837259|ref|XP_614603.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-516, + strand, RNAz p=0.678117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-516, + strand, RNAz p=0.678117

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-190, gnl|bosTau2|chr27 (24035051-24034861)
               

               
               1-190, gnl|canFam2|chr16 (25899024-25898762)
               

               
               1-190, gnl|dasNov1|scaffold_7507 (79611-79350)
               

               
               1-190, gnl|echTel1|scaffold_297439 (60444-60185)
               

               
               1-190, gnl|fr1|chrUn (323022934-323022678)
               

               
               1-190, gnl|galGal2|chrZ (25523789-25523999)
               

               
               1-190, gnl|hg17|chr8 (42813483-42813740)
               

               
               1-190, gnl|Hg17|chr8 (42813678-42813488)
               

               
               1-190, gnl|loxAfr1|scaffold_8415 (33637-33890)
               

               
               1-190, gnl|mm7|chr8 (24917464-24917214)
               

               
               1-190, gnl|Mm7|chr8 (24917267-24917457)
               

               
               1-190, gnl|monDom2|scaffold_1 (79137851-79137619)
               

               
               1-190, gnl|oryCun1|scaffold_172629 (55719-55454)
               

               
               1-190, gnl|panTro1|chr7 (44292309-44292566)
               

               
               1-190, gnl|rheMac2|chr8 (43441112-43441367)
               

               
               1-190, gnl|rn3|chr16 (70270343-70270600)
               

               
               1-190, gnl|xenTro1|scaffold_788 (227175-227412)
               


               
               197-873, gnl|bosTau2|chr27 (24033936-24033260)
               

               
               197-873, gnl|Hg17|chr8 (42812633-42811962)
               

               
               197-873, gnl|Mm7|chr8 (24918926-24919569)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-190, gnl|bosTau2|chr27 (24035051-24034861)
               

               
               1-190, gnl|canFam2|chr16 (25899024-25898762)
               

               
               1-190, gnl|dasNov1|scaffold_7507 (79611-79350)
               

               
               1-190, gnl|echTel1|scaffold_297439 (60444-60185)
               

               
               1-190, gnl|fr1|chrUn (323022934-323022678)
               

               
               1-190, gnl|galGal2|chrZ (25523789-25523999)
               

               
               1-190, gnl|hg17|chr8 (42813483-42813740)
               

               
               1-190, gnl|Hg17|chr8 (42813678-42813488)
               

               
               1-190, gnl|loxAfr1|scaffold_8415 (33637-33890)
               

               
               1-190, gnl|mm7|chr8 (24917464-24917214)
               

               
               1-190, gnl|Mm7|chr8 (24917267-24917457)
               

               
               1-190, gnl|monDom2|scaffold_1 (79137851-79137619)
               

               
               1-190, gnl|oryCun1|scaffold_172629 (55719-55454)
               

               
               1-190, gnl|panTro1|chr7 (44292309-44292566)
               

               
               1-190, gnl|rheMac2|chr8 (43441112-43441367)
               

               
               1-190, gnl|rn3|chr16 (70270343-70270600)
               

               
               1-190, gnl|xenTro1|scaffold_788 (227175-227412)
               


               
               197-873, gnl|bosTau2|chr27 (24033936-24033260)
               

               
               197-873, gnl|Hg17|chr8 (42812633-42811962)
               

               
               197-873, gnl|Mm7|chr8 (24918926-24919569)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ret (0.128733)

	1-190, gnl\|bosTau2\|chr27 (24035051-24034861)
	1-190, gnl\|canFam2\|chr16 (25899024-25898762)
	1-190, gnl\|dasNov1\|scaffold_7507 (79611-79350)
	1-190, gnl\|echTel1\|scaffold_297439 (60444-60185)
	1-190, gnl\|fr1\|chrUn (323022934-323022678)
	1-190, gnl\|galGal2\|chrZ (25523789-25523999)
	1-190, gnl\|hg17\|chr8 (42813483-42813740)
	1-190, gnl\|Hg17\|chr8 (42813678-42813488)
	1-190, gnl\|loxAfr1\|scaffold_8415 (33637-33890)
	1-190, gnl\|mm7\|chr8 (24917464-24917214)
	1-190, gnl\|Mm7\|chr8 (24917267-24917457)
	1-190, gnl\|monDom2\|scaffold_1 (79137851-79137619)
	1-190, gnl\|oryCun1\|scaffold_172629 (55719-55454)
	1-190, gnl\|panTro1\|chr7 (44292309-44292566)
	1-190, gnl\|rheMac2\|chr8 (43441112-43441367)
	1-190, gnl\|rn3\|chr16 (70270343-70270600)
	1-190, gnl\|xenTro1\|scaffold_788 (227175-227412)

	197-873, gnl\|bosTau2\|chr27 (24033936-24033260)
	197-873, gnl\|Hg17\|chr8 (42812633-42811962)
	197-873, gnl\|Mm7\|chr8 (24918926-24919569)

	cte (0.29274)
	isp (0.150376)
	liv (0.146284)
	ste (0.135208)
	ret (0.128733)