Ss1.1-rret20_p2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCGCCGTGGAGTGGTGCAGTGGCGCTGCTCTCCTCGGGCTCGGAGGGGCGTGCAGTG GTAGCCTAAGAGAAGATGGGAAAGGGCTGTAAAGTTGTGGTTTGTGGCTTGTTATCTGTG GGAAAAACAGCAATTTTGGAGCAGCTCCTTTATGGGAATCATACTGTTGGAATGGAAGAC TGTGAAACAATGGAAGATGTGTATATGGCCTCAGTGGAAACGGATCGCGGAGTAAAGGAG CAGTTACATCTTTATGACACCAGAGGCCTACAGGAGGGTGTGGAGCTGCCAAAGCATTAT TTTTCATTTGCTGATGGCTTTGTTCTTGTGTACAGCGTGAATAACCTTGAATCCTTTCAA AGAGTAGAGCTTCTGAAGAAAGAAATTGATAAGTTCAAAGACAAAAAAGAGGTGGCAATT GTTGTATTAGGAAACAAAATTGATCTTTCTGAGCAAAGACAGGTGGACGCAGAAGTGGCA CAACAGTGGGCCAGGAGCGAGAAGGTGCGGCTGTGGGAGGTGACAGTCACGGACCGGAAA ACTCTGATCGAGCCGTTCACTCTGTTAGCCAGCAAACTCTCCCAGCCCCAGAGCAAATCA AGCTTCCCTCTGCCTGGGAGGAAGAACAAAGGGAACTCCAGCTCTGAGAACTAAAAAGTG GAATGTCACAATCATTTGCTGAATAGTGACTGCCTTTAGGTATCTGTGAACAAACATATT TAAAACAGGACATGTCTACCTTTGGTCTTTAGAAAATCCCTAGGGAATTAATTTAATGCA CTTTAGCTAATTAAGTTATTATTGCCTGATATGAAATACTATACTAGCATTCTCATTGTT TGAAACTTGTCCCTGAAACCAGCACCTTTGTTACATTTATGTTGAACTTGTCAAAAGAAT AAAGTTTGAGTGGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCGCCGTGGAGTGGTGCAGTGGCGCTGCTCTCCTCGGGCTCGGAGGGGCGTGCAGTG GTAGCCTAAGAGAAGATGGGAAAGGGCTGTAAAGTTGTGGTTTGTGGCTTGTTATCTGTG GGAAAAACAGCAATTTTGGAGCAGCTCCTTTATGGGAATCATACTGTTGGAATGGAAGAC TGTGAAACAATGGAAGATGTGTATATGGCCTCAGTGGAAACGGATCGCGGAGTAAAGGAG CAGTTACATCTTTATGACACCAGAGGCCTACAGGAGGGTGTGGAGCTGCCAAAGCATTAT TTTTCATTTGCTGATGGCTTTGTTCTTGTGTACAGCGTGAATAACCTTGAATCCTTTCAA AGAGTAGAGCTTCTGAAGAAAGAAATTGATAAGTTCAAAGACAAAAAAGAGGTGGCAATT GTTGTATTAGGAAACAAAATTGATCTTTCTGAGCAAAGACAGGTGGACGCAGAAGTGGCA CAACAGTGGGCCAGGAGCGAGAAGGTGCGGCTGTGGGAGGTGACAGTCACGGACCGGAAA ACTCTGATCGAGCCGTTCACTCTGTTAGCCAGCAAACTCTCCCAGCCCCAGAGCAAATCA AGCTTCCCTCTGCCTGGGAGGAAGAACAAAGGGAACTCCAGCTCTGAGAACTAAAAAGTG GAATGTCACAATCATTTGCTGAATAGTGACTGCCTTTAGGTATCTGTGAACAAACATATT TAAAACAGGACATGTCTACCTTTGGTCTTTAGAAAATCCCTAGGGAATTAATTTAATGCA CTTTAGCTAATTAAGTTATTATTGCCTGATATGAAATACTATACTAGCATTCTCATTGTT TGAAACTTGTCCCTGAAACCAGCACCTTTGTTACATTTATGTTGAACTTGTCAAAAGAAT AAAGTTTGAGTGGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 68-170, + strand, RNAz p=0.731167 | |
| 77-170, - strand, RNAz p=0.723852 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 68-170, + strand, RNAz p=0.731167 | |
| 77-170, - strand, RNAz p=0.723852 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 68-170, gnl|bosTau2|chr2 (78857226-78857328) | |
| 68-170, gnl|canFam2|chr23 (22881484-22881335) | |
| 68-170, gnl|danRer3|chr23 (35881816-35881676) | |
| 68-170, gnl|dasNov1|scaffold_9122 (12043-11903) | |
| 68-170, gnl|echTel1|scaffold_285815 (32344-32473) | |
| 68-170, gnl|fr1|chrUn (96687748-96687638) | |
| 68-170, gnl|galGal2|chr2 (36299097-36299224) | |
| 68-170, gnl|hg17|chr3 (23927275-23927422) | |
| 68-170, gnl|Hg17|chr3 (23927407-23927305) | |
| 68-170, gnl|loxAfr1|scaffold_27677 (21056-20909) | |
| 68-170, gnl|mm7|chr14 (16096579-16096433) | |
| 68-170, gnl|Mm7|chr14 (16096446-16096548) | |
| 68-170, gnl|monDom2|scaffold_7 (79661866-79661999) | |
| 68-170, gnl|oryCun1|scaffold_161769 (1714-1568) | |
| 68-170, gnl|panTro1|chr2 (24863310-24863457) | |
| 68-170, gnl|rheMac2|chr2 (166362212-166362359) | |
| 68-170, gnl|rn3|chr15 (9076991-9077133) | |
| 68-170, gnl|tetNig1|chrUn_random (134837621-134837525) | |
| 68-170, gnl|xenTro1|scaffold_43 (1417929-1418042) | |
| 192-414, gnl|bosTau2|chr19 (36507459-36507237) | |
| 192-414, gnl|Hg17|chr17 (37427965-37428187) | |
| 192-414, gnl|Mm7|chr11 (100734004-100734226) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-170, gnl|bosTau2|chr2 (78857226-78857328) | |
| 68-170, gnl|canFam2|chr23 (22881484-22881335) | |
| 68-170, gnl|danRer3|chr23 (35881816-35881676) | |
| 68-170, gnl|dasNov1|scaffold_9122 (12043-11903) | |
| 68-170, gnl|echTel1|scaffold_285815 (32344-32473) | |
| 68-170, gnl|fr1|chrUn (96687748-96687638) | |
| 68-170, gnl|galGal2|chr2 (36299097-36299224) | |
| 68-170, gnl|hg17|chr3 (23927275-23927422) | |
| 68-170, gnl|Hg17|chr3 (23927407-23927305) | |
| 68-170, gnl|loxAfr1|scaffold_27677 (21056-20909) | |
| 68-170, gnl|mm7|chr14 (16096579-16096433) | |
| 68-170, gnl|Mm7|chr14 (16096446-16096548) | |
| 68-170, gnl|monDom2|scaffold_7 (79661866-79661999) | |
| 68-170, gnl|oryCun1|scaffold_161769 (1714-1568) | |
| 68-170, gnl|panTro1|chr2 (24863310-24863457) | |
| 68-170, gnl|rheMac2|chr2 (166362212-166362359) | |
| 68-170, gnl|rn3|chr15 (9076991-9077133) | |
| 68-170, gnl|tetNig1|chrUn_random (134837621-134837525) | |
| 68-170, gnl|xenTro1|scaffold_43 (1417929-1418042) | |
| 192-414, gnl|bosTau2|chr19 (36507459-36507237) | |
| 192-414, gnl|Hg17|chr17 (37427965-37428187) | |
| 192-414, gnl|Mm7|chr11 (100734004-100734226) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cbe (0.956938) | |
| spc (0.566829) | |
| isp (0.451128) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| fco (0.314416) | |
| ldo (0.291008) | |
| ece (0.229305) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ecc (0.115035) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.956938) | |
| spc (0.566829) | |
| isp (0.451128) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| fco (0.314416) | |
| ldo (0.291008) | |
| ece (0.229305) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ecc (0.115035) |