Non-Coding RNA Search

Ss1.1-rret22_a12.5

Sequence:


               
               ATCTAGGTTGTATAGTTTCTATTGCTAAGGGCTTCGTGTCTTCTGGTTTCTTTACCCCCT
TTCTCTTCTTCATCCTCTCCCTCCTCATCTACCTTTGTCTGCTATCTATGCACTGTCATT
GCTCTACCAGCCCTCAGCGCCATCACCCTAGCTAGGCAATTTCCCTTTCCACTGGATGCT
CCACACATCCAGCTCCTGAGCAAGGTACCAGACATTTTCTCTCTTGATATTTTACTTCTT
TTGTACAGAGTTAGGCTTTTTCAAGTGATGGGATACCCTGACCTGTTGAGAACTGTCTAC
AGAAATCACCTGCTTTTGGTATTTATTGGCCTCCACAACAGACAAGTGAGTTAATAAAGA
AGATTTATTGGCTGTTAGACAGCAGAGTGCCTGAGAGCAAGGTCTCCTGCCTGAAAGGTT
CTAATCTTTCTTGTGCCTCGTCTTTCTGGCTGTCTGGTGAAGCTTATGGACTCCTTTGAA
GAATACTTTTTAAAATGCATAAAGTTCAAAGACAAAGTAAACCAATATATCAGAATATTT
TGTCCAAAAATTTTTTTAATTGAAGTATAGTTAATTTATAATGTGTTAAATTCTTAGAGC
AAAGTGATTCAGTTATACATATATACATATTCTTTCACGTATTCTTTTCCATTATGGTTT
ATTAGGGGATATTGAATATATCAAAATATTTTTTAAAATTATAAGATGGTTGTCTTGATA
GTCAGCACCATATAGACAGGAAAACAGTGATTATGTTTGAACCAACAGTGGGCTAATGAG
GGGGTATTGAAGAACTACTGTACTTTTGAAATATGATTCCACTTGAATGATATTTTGAGA
TACATGCAACAATGTTAATGTGATATGAAAACATGTACAATTTTATAGTGTTGATCAAAG
GATGACCAGTGTTGGTGATAATACTGTGATTTGTTGCATGAAATTACAACAAAGGAAATA
GTAAATTTTTGTTAAAGGCTAATAAAAATAATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTAGGTTGTATAGTTTCTATTGCTAAGGGCTTCGTGTCTTCTGGTTTCTTTACCCCCT
TTCTCTTCTTCATCCTCTCCCTCCTCATCTACCTTTGTCTGCTATCTATGCACTGTCATT
GCTCTACCAGCCCTCAGCGCCATCACCCTAGCTAGGCAATTTCCCTTTCCACTGGATGCT
CCACACATCCAGCTCCTGAGCAAGGTACCAGACATTTTCTCTCTTGATATTTTACTTCTT
TTGTACAGAGTTAGGCTTTTTCAAGTGATGGGATACCCTGACCTGTTGAGAACTGTCTAC
AGAAATCACCTGCTTTTGGTATTTATTGGCCTCCACAACAGACAAGTGAGTTAATAAAGA
AGATTTATTGGCTGTTAGACAGCAGAGTGCCTGAGAGCAAGGTCTCCTGCCTGAAAGGTT
CTAATCTTTCTTGTGCCTCGTCTTTCTGGCTGTCTGGTGAAGCTTATGGACTCCTTTGAA
GAATACTTTTTAAAATGCATAAAGTTCAAAGACAAAGTAAACCAATATATCAGAATATTT
TGTCCAAAAATTTTTTTAATTGAAGTATAGTTAATTTATAATGTGTTAAATTCTTAGAGC
AAAGTGATTCAGTTATACATATATACATATTCTTTCACGTATTCTTTTCCATTATGGTTT
ATTAGGGGATATTGAATATATCAAAATATTTTTTAAAATTATAAGATGGTTGTCTTGATA
GTCAGCACCATATAGACAGGAAAACAGTGATTATGTTTGAACCAACAGTGGGCTAATGAG
GGGGTATTGAAGAACTACTGTACTTTTGAAATATGATTCCACTTGAATGATATTTTGAGA
TACATGCAACAATGTTAATGTGATATGAAAACATGTACAATTTTATAGTGTTGATCAAAG
GATGACCAGTGTTGGTGATAATACTGTGATTTGTTGCATGAAATTACAACAAAGGAAATA
GTAAATTTTTGTTAAAGGCTAATAAAAATAATGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               360-460, - strand, RNAz p=0.877153
               

               
               829-994, - strand, RNAz p=0.850895

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-460, - strand, RNAz p=0.877153
               

               
               829-994, - strand, RNAz p=0.850895

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               5-572, gnl|bosTau2|chr1 (75414651-75415209)
               

               
               5-572, gnl|Hg17|chr3 (150569429-150568863)
               


               
               791-994, gnl|bosTau2|chr1 (75415792-75415999)
               

               
               791-994, gnl|canFam2|chr23 (47201105-47201337)
               

               
               791-994, gnl|dasNov1|scaffold_2416 (138192-137958)
               

               
               791-994, gnl|hg17|chr3 (150568243-150568486)
               

               
               791-994, gnl|Hg17|chr3 (150568546-150568345)
               

               
               791-994, gnl|loxAfr1|scaffold_28778 (6084-5792)
               

               
               791-994, gnl|mm7|chr3 (57412269-57412514)
               

               
               791-994, gnl|oryCun1|scaffold_117698 (8821-9047)
               

               
               791-994, gnl|panTro1|chr2 (153593136-153593381)
               

               
               791-994, gnl|rheMac2|chr2 (138427549-138427312)
               

               
               791-994, gnl|rn3|chr2 (146469602-146469847)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-572, gnl|bosTau2|chr1 (75414651-75415209)
               

               
               5-572, gnl|Hg17|chr3 (150569429-150568863)
               


               
               791-994, gnl|bosTau2|chr1 (75415792-75415999)
               

               
               791-994, gnl|canFam2|chr23 (47201105-47201337)
               

               
               791-994, gnl|dasNov1|scaffold_2416 (138192-137958)
               

               
               791-994, gnl|hg17|chr3 (150568243-150568486)
               

               
               791-994, gnl|Hg17|chr3 (150568546-150568345)
               

               
               791-994, gnl|loxAfr1|scaffold_28778 (6084-5792)
               

               
               791-994, gnl|mm7|chr3 (57412269-57412514)
               

               
               791-994, gnl|oryCun1|scaffold_117698 (8821-9047)
               

               
               791-994, gnl|panTro1|chr2 (153593136-153593381)
               

               
               791-994, gnl|rheMac2|chr2 (138427549-138427312)
               

               
               791-994, gnl|rn3|chr2 (146469602-146469847)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               sug (1.14562)
               

               
               mgp (0.692042)
               

               
               vin (0.665115)
               

               
               ret (0.514933)
               

               
               liv (0.438853)
               

               
               csk (0.422238)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               pla (0.267344)
               

               
               pan (0.23596)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (1.14562)
               

               
               mgp (0.692042)
               

               
               vin (0.665115)
               

               
               ret (0.514933)
               

               
               liv (0.438853)
               

               
               csk (0.422238)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               pla (0.267344)
               

               
               pan (0.23596)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	360-460, - strand, RNAz p=0.877153
	829-994, - strand, RNAz p=0.850895

	5-572, gnl\|bosTau2\|chr1 (75414651-75415209)
	5-572, gnl\|Hg17\|chr3 (150569429-150568863)

	791-994, gnl\|bosTau2\|chr1 (75415792-75415999)
	791-994, gnl\|canFam2\|chr23 (47201105-47201337)
	791-994, gnl\|dasNov1\|scaffold_2416 (138192-137958)
	791-994, gnl\|hg17\|chr3 (150568243-150568486)
	791-994, gnl\|Hg17\|chr3 (150568546-150568345)
	791-994, gnl\|loxAfr1\|scaffold_28778 (6084-5792)
	791-994, gnl\|mm7\|chr3 (57412269-57412514)
	791-994, gnl\|oryCun1\|scaffold_117698 (8821-9047)
	791-994, gnl\|panTro1\|chr2 (153593136-153593381)
	791-994, gnl\|rheMac2\|chr2 (138427549-138427312)
	791-994, gnl\|rn3\|chr2 (146469602-146469847)

	sug (1.14562)
	mgp (0.692042)
	vin (0.665115)
	ret (0.514933)
	liv (0.438853)
	csk (0.422238)
	isp (0.300752)
	bfe (0.299715)
	ski (0.29347)
	pla (0.267344)
	pan (0.23596)
	duo (0.172801)
	fhi (0.169578)
	mga (0.160205)
	nmm (0.132802)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	jca (0.11396)