Non-Coding RNA Search

Ss1.1-rret22_b13.5

Sequence:


               
               CCTCACTGAAACAAGGTTTTTAGAAAAGTTTCTGATTTGTCAGGATCATTTTGTTTCTCA
GCTGTCCTCACAGTTATGCCATCTATATTTTCAAGTGTTTTTACTTTAAATGCCCCTGCC
CTGCAACATAGACACTACTGAATCCTTTTTATGATAACACCAGGCCACTGTAATTGGGCC
AGGAGGTCTAGTCAAAATCAGCATATTTACTTCATCCGTGGTCAACCAGTGTTTCTTTTG
GAAGTCATGATAGAGTTGCTAATGATTTCCGAAGGAACTTTGCCAAAACTCTGATTATAG
CTTGGATTTCACCTTTTTGTGCTTTAGGGTAGTAGGATTTCTGCTTTTTTTTTTTTTTTT
TTTTGAGAGGTCAGAAAGAATGTAAGTATGTAATGGATAAAACTGAAAATCTGTAAATTT
TGCTTGAATAGGACAGCAGTCCTCATTGCAATTAAAATAATTTACTGAGTATATCATTAC
TGAACCCTATTAATTTGTGATTTTAATGTGATTTAAGTGAAAAGACAACCTTTACCTAAA
GGAAAGAATAATTATCAATCTATTTATTTTGAGTTAAGTAGTATGGAGTATCTGTGTCCA
GAACAGATGTTAAAAATATGCACATGAATGCTTTCTGAATCAGAGATGTATGCTAAGCTT
TAACATTTCTTACTTTTTTAATAAATATTTTCTAAGGGAAGATTAATTCTCAGTGTACAT
GGAAAAACTGATGCACCAAGGATAAGTGTTTAGTTTCAAATTATATCATTTTACCACTGA
TTTGCTGGGACTAGCATTCAGGTACTGATAGCCAGCCCCATAGATTTCAGTAACTGGCTT
GATGTTCCCAATTTGAGAATGTATGTGTGTGGTTAGGAGTAAATTTAGCCTCCAATAGTG
ATTACTGTTACAACATAGAAGAACATTATTTGAGTGATTTATAATGAAGATTTTTATTTG
TGAATATTTCAGTAAAGTTTGTGTTGATTGTTGATAATACTGTTTATCTACTGAAGCACT
TTAATAAAAAGAGAATTGAACTGAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCACTGAAACAAGGTTTTTAGAAAAGTTTCTGATTTGTCAGGATCATTTTGTTTCTCA
GCTGTCCTCACAGTTATGCCATCTATATTTTCAAGTGTTTTTACTTTAAATGCCCCTGCC
CTGCAACATAGACACTACTGAATCCTTTTTATGATAACACCAGGCCACTGTAATTGGGCC
AGGAGGTCTAGTCAAAATCAGCATATTTACTTCATCCGTGGTCAACCAGTGTTTCTTTTG
GAAGTCATGATAGAGTTGCTAATGATTTCCGAAGGAACTTTGCCAAAACTCTGATTATAG
CTTGGATTTCACCTTTTTGTGCTTTAGGGTAGTAGGATTTCTGCTTTTTTTTTTTTTTTT
TTTTGAGAGGTCAGAAAGAATGTAAGTATGTAATGGATAAAACTGAAAATCTGTAAATTT
TGCTTGAATAGGACAGCAGTCCTCATTGCAATTAAAATAATTTACTGAGTATATCATTAC
TGAACCCTATTAATTTGTGATTTTAATGTGATTTAAGTGAAAAGACAACCTTTACCTAAA
GGAAAGAATAATTATCAATCTATTTATTTTGAGTTAAGTAGTATGGAGTATCTGTGTCCA
GAACAGATGTTAAAAATATGCACATGAATGCTTTCTGAATCAGAGATGTATGCTAAGCTT
TAACATTTCTTACTTTTTTAATAAATATTTTCTAAGGGAAGATTAATTCTCAGTGTACAT
GGAAAAACTGATGCACCAAGGATAAGTGTTTAGTTTCAAATTATATCATTTTACCACTGA
TTTGCTGGGACTAGCATTCAGGTACTGATAGCCAGCCCCATAGATTTCAGTAACTGGCTT
GATGTTCCCAATTTGAGAATGTATGTGTGTGGTTAGGAGTAAATTTAGCCTCCAATAGTG
ATTACTGTTACAACATAGAAGAACATTATTTGAGTGATTTATAATGAAGATTTTTATTTG
TGAATATTTCAGTAAAGTTTGTGTTGATTGTTGATAATACTGTTTATCTACTGAAGCACT
TTAATAAAAAGAGAATTGAACTGAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               723-858, - strand, RNAz p=0.999826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               723-858, - strand, RNAz p=0.999826

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1043, gnl|bosTau2|chr4 (49544906-49543863)
               

               
               5-1043, gnl|Hg17|chr7 (128720739-128722181)
               

               
               5-1043, gnl|Mm7|chr6 (29890882-29891816)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1043, gnl|bosTau2|chr4 (49544906-49543863)
               

               
               5-1043, gnl|Hg17|chr7 (128720739-128722181)
               

               
               5-1043, gnl|Mm7|chr6 (29890882-29891816)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.717703)
               

               
               ret (0.643666)
               

               
               spc (0.566829)
               

               
               ste (0.270416)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               ret (0.643666)
               

               
               spc (0.566829)
               

               
               ste (0.270416)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)

	5-1043, gnl\|bosTau2\|chr4 (49544906-49543863)
	5-1043, gnl\|Hg17\|chr7 (128720739-128722181)
	5-1043, gnl\|Mm7\|chr6 (29890882-29891816)

	cbe (0.717703)
	ret (0.643666)
	spc (0.566829)
	ste (0.270416)
	gul (0.177588)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	spl (0.143184)
	hyp (0.142837)