Non-Coding RNA Search

Ss1.1-rret22_d11.5

Sequence:


               
               AAAAAAAAGAAGACTTTATCAGTTATTAGAATCTGCTTACTCAGAAACCTCCACACCTAC
TCCTTCACCATATGCTACACCAACTCACACAGATATTACTCCTACGGACCCATCATTTGC
CACTCCTCCACGGATAAAGTCAGATGATGAAGCTTGTAGAAATGGTTATAAGCCCATATA
TTCACCAGTTACCCCAGTAACTCCTGGCACACCAGGAAATACCATGCACTTTGAGGTGAG
TTCTTCCCCAGAAAGTTCTCCAGAAATTAAGAGACGCACTTATAGTCAAGAGGGATATGA
CAGATCTTCAACCATGTTAACACTGGGGCCTTTTAGAAATTCCAATTTATCTGAACTGGG
CCTGCAAGAAATAAAGACTATTGGTTATGCCAGCCCTAGGAATAGAACTGAAGTCAATAG
GCAGTGCCCTGGAGAAAAGGAATCTGTGTCAGACCTTCAGCTGGGACTTGATGCAATTGA
GCAAACTGCCTTGCATAAACCATGGAAACACCACACATGACAGGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAGAAGACTTTATCAGTTATTAGAATCTGCTTACTCAGAAACCTCCACACCTAC
TCCTTCACCATATGCTACACCAACTCACACAGATATTACTCCTACGGACCCATCATTTGC
CACTCCTCCACGGATAAAGTCAGATGATGAAGCTTGTAGAAATGGTTATAAGCCCATATA
TTCACCAGTTACCCCAGTAACTCCTGGCACACCAGGAAATACCATGCACTTTGAGGTGAG
TTCTTCCCCAGAAAGTTCTCCAGAAATTAAGAGACGCACTTATAGTCAAGAGGGATATGA
CAGATCTTCAACCATGTTAACACTGGGGCCTTTTAGAAATTCCAATTTATCTGAACTGGG
CCTGCAAGAAATAAAGACTATTGGTTATGCCAGCCCTAGGAATAGAACTGAAGTCAATAG
GCAGTGCCCTGGAGAAAAGGAATCTGTGTCAGACCTTCAGCTGGGACTTGATGCAATTGA
GCAAACTGCCTTGCATAAACCATGGAAACACCACACATGACAGGACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51710851|ref|XP_485571.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51710851|ref|XP_485571.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               324-483, + strand, RNAz p=0.723075

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-483, + strand, RNAz p=0.723075

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-240, gnl|bosTau2|chr4 (22263314-22263552)
               

               
               2-240, gnl|Hg17|chr7 (104340937-104341175)
               

               
               2-240, gnl|Mm7|chr5 (22537482-22537720)
               


               
               285-528, gnl|bosTau2|chr4 (22264113-22264358)
               

               
               285-528, gnl|Hg17|chr7 (104341752-104341997)
               

               
               285-528, gnl|Mm7|chr5 (22538214-22538458)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-240, gnl|bosTau2|chr4 (22263314-22263552)
               

               
               2-240, gnl|Hg17|chr7 (104340937-104341175)
               

               
               2-240, gnl|Mm7|chr5 (22537482-22537720)
               


               
               285-528, gnl|bosTau2|chr4 (22264113-22264358)
               

               
               285-528, gnl|Hg17|chr7 (104341752-104341997)
               

               
               285-528, gnl|Mm7|chr5 (22538214-22538458)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ret (0.128733)

	2-240, gnl\|bosTau2\|chr4 (22263314-22263552)
	2-240, gnl\|Hg17\|chr7 (104340937-104341175)
	2-240, gnl\|Mm7\|chr5 (22537482-22537720)

	285-528, gnl\|bosTau2\|chr4 (22264113-22264358)
	285-528, gnl\|Hg17\|chr7 (104341752-104341997)
	285-528, gnl\|Mm7\|chr5 (22538214-22538458)