Non-Coding RNA Search

Ss1.1-rret22_e7.5

Sequence:


               
               CACCTTGTACATTATCGAGGGTTCACAGCAGGTAGTTGTTTTTCCGTTGTCTAACCGATG
TATTCCCTATGGTTTCGATCATTTGTTGAGTGGCTACTACGTGCCGGGGAGGAGGAATCC
TTCCTCCCTACAAACAAGGAACTCAAATATTGGAATGTGAGAGAAAATGCAGTAACTGTA
ACACAGATGAAAACATGGCTCCAGGATGTATTGGAGATTTGCTGAGATGATCAAGGACAG
TGACATACCAGGATTGAAATTGATCCAAGCCTCTTAAACATAGAAGACGCTTGCTTTTTT
ACTTTTGGAATTGTAAATTGGATTGAGCAAGATCTCAAGGCATAATTTAAATTCTTCTTG
TCTAAACTTGCCATATCTCATTTACTCACCTGTTGTGATCACTCCCTACATTGCCTGTAA
GTTAGGAATGGTGCATCCTTCAAAGGATTGTTAAATTTTAATGCCATCTTGTAAAATGAG
AAGTTGTAAACAAATGTAAGGTTTTAATATTAAAGAGACGTTGTAGTGAAATGGGAAATG
CGCTGGATTAAGTCAGAACATTAACTCAGAATCTGAGTGCTGAATTTTCCACTTATTCAT
TTGACACTGAATAAGAGATCAAATCTCTTCCTGTTCTCTATCTCTAAAATTGGAATGCTT
CCTCTCCAAAACAGCAGAGCATAGTTTCCAAGAGTTCCCTGACTCTAGAGTCAGCTAGCC
TTTTTTTTCATGATTGGTTCTCACTGTTTTAATTGCTCTGTGATGTGTGGAACTTCTTAC
TCACTTTGTAGATCTTACATAGATTTAATGAATAATTGTGAAGAATAAGTGAGATAGTTT
CCCTAATAGTAAAAACGTGCTGCCTGATATACCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTTGTACATTATCGAGGGTTCACAGCAGGTAGTTGTTTTTCCGTTGTCTAACCGATG
TATTCCCTATGGTTTCGATCATTTGTTGAGTGGCTACTACGTGCCGGGGAGGAGGAATCC
TTCCTCCCTACAAACAAGGAACTCAAATATTGGAATGTGAGAGAAAATGCAGTAACTGTA
ACACAGATGAAAACATGGCTCCAGGATGTATTGGAGATTTGCTGAGATGATCAAGGACAG
TGACATACCAGGATTGAAATTGATCCAAGCCTCTTAAACATAGAAGACGCTTGCTTTTTT
ACTTTTGGAATTGTAAATTGGATTGAGCAAGATCTCAAGGCATAATTTAAATTCTTCTTG
TCTAAACTTGCCATATCTCATTTACTCACCTGTTGTGATCACTCCCTACATTGCCTGTAA
GTTAGGAATGGTGCATCCTTCAAAGGATTGTTAAATTTTAATGCCATCTTGTAAAATGAG
AAGTTGTAAACAAATGTAAGGTTTTAATATTAAAGAGACGTTGTAGTGAAATGGGAAATG
CGCTGGATTAAGTCAGAACATTAACTCAGAATCTGAGTGCTGAATTTTCCACTTATTCAT
TTGACACTGAATAAGAGATCAAATCTCTTCCTGTTCTCTATCTCTAAAATTGGAATGCTT
CCTCTCCAAAACAGCAGAGCATAGTTTCCAAGAGTTCCCTGACTCTAGAGTCAGCTAGCC
TTTTTTTTCATGATTGGTTCTCACTGTTTTAATTGCTCTGTGATGTGTGGAACTTCTTAC
TCACTTTGTAGATCTTACATAGATTTAATGAATAATTGTGAAGAATAAGTGAGATAGTTT
CCCTAATAGTAAAAACGTGCTGCCTGATATACCAAC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               32-393, gnl|bosTau2|chr22 (150192-150562)
               

               
               32-393, gnl|Hg17|chr3 (28364652-28364287)
               

               
               32-393, gnl|Mm7|chr9 (117723242-117723550)
               


               
               425-875, gnl|bosTau2|chr22 (150566-151017)
               

               
               425-875, gnl|Hg17|chr3 (28364262-28363791)
               

               
               425-875, gnl|Mm7|chr9 (117723554-117723983)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-393, gnl|bosTau2|chr22 (150192-150562)
               

               
               32-393, gnl|Hg17|chr3 (28364652-28364287)
               

               
               32-393, gnl|Mm7|chr9 (117723242-117723550)
               


               
               425-875, gnl|bosTau2|chr22 (150566-151017)
               

               
               425-875, gnl|Hg17|chr3 (28364262-28363791)
               

               
               425-875, gnl|Mm7|chr9 (117723554-117723983)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	32-393, gnl\|bosTau2\|chr22 (150192-150562)
	32-393, gnl\|Hg17\|chr3 (28364652-28364287)
	32-393, gnl\|Mm7\|chr9 (117723242-117723550)

	425-875, gnl\|bosTau2\|chr22 (150566-151017)
	425-875, gnl\|Hg17\|chr3 (28364262-28363791)
	425-875, gnl\|Mm7\|chr9 (117723554-117723983)

	rec (0.346141)
	vin (0.332557)
	gul (0.177588)
	fty (0.17584)
	fat (0.147427)
	spl (0.143184)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	ldo (0.0970026)