Non-Coding RNA Search

Ss1.1-rret22_g12.5

Sequence:


               
               GGAGGATATTAATTCTTTGGCATTATTGGGAATGAAGCCTTGCCAATTTAAACTTTATTG
AAAGTTCTCCCAAACATGTTGTTTACATATAGGTAAAGGAACAGAAGCAATAGAGAAAAT
ATAATTTTCATTTCTTTGATGTAGGTCATCTAAAAAGAAATGGAGCAGGGACAATAATGT
TCTTTATATTCTATTAAAACAGTATTGGAAAAGGCTTCACTTAAAACTGAAGGAAATACA
TATTAATTATGGGAAAATATAGTCTGAAAAATGTATAATTCCATTAATGTTTATTTGCAT
AGGCAAATTCTGAATATTGTAACTTGGATCCTTGAGAAGTATCCATTTTTTGTAGTAATT
GAGGTAAAAATAGACCATGTGAAGAGTTTTCAAAATATAACTTGTATCTTTGTATGTTTT
AAACTAAATGTAGCTCTATAGTATTTTATTATAATTAATTTTTCAATCCTAAGAATGAAA
TCTGTAAATTATTATTCTTTGCTGTACTTCTGTGTTTGTATGGTTGGACTTTTGAAAACT
GGTGAGATTACACAATCATAAACCTAGATGTCTTAAATACAAGGAATTACAAAGTGTGAT
TTTTGTCTTTAAGACCCGGAAGAATCCTTTGTGCTTCAGTGTGTATCTGTGCCACACTTG
ACTCCTTAGTAGATGTGGCTCCAGTGCAGTAGACATTAACTGCCATCATCTCTTCTGTTT
TGTGCCAAATAGAGCCATTTAGTCAGGTGAAATTAAATGTCAACTTAAAATACTTTCAAA
GAAACTTGGATTTCAAAAACTTGTACAATAAAAAAGGCCCCCTGAAGAAATCTTCAAAGT
ACTAGTTAACACATGGCAAATGCAGGAAACTGAAATCAGTAATATGTTGTATGGTAAACT
TTTCCACCTAATGTGTTGTGAGTTTGCTTCAGAAACATTCTTCCAGAAAGTTTTGTACCC
TCCATTTGGAATTCAAACAGTGAATTTCATGTATTTTATCATGACAAATAAATTAATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGATATTAATTCTTTGGCATTATTGGGAATGAAGCCTTGCCAATTTAAACTTTATTG
AAAGTTCTCCCAAACATGTTGTTTACATATAGGTAAAGGAACAGAAGCAATAGAGAAAAT
ATAATTTTCATTTCTTTGATGTAGGTCATCTAAAAAGAAATGGAGCAGGGACAATAATGT
TCTTTATATTCTATTAAAACAGTATTGGAAAAGGCTTCACTTAAAACTGAAGGAAATACA
TATTAATTATGGGAAAATATAGTCTGAAAAATGTATAATTCCATTAATGTTTATTTGCAT
AGGCAAATTCTGAATATTGTAACTTGGATCCTTGAGAAGTATCCATTTTTTGTAGTAATT
GAGGTAAAAATAGACCATGTGAAGAGTTTTCAAAATATAACTTGTATCTTTGTATGTTTT
AAACTAAATGTAGCTCTATAGTATTTTATTATAATTAATTTTTCAATCCTAAGAATGAAA
TCTGTAAATTATTATTCTTTGCTGTACTTCTGTGTTTGTATGGTTGGACTTTTGAAAACT
GGTGAGATTACACAATCATAAACCTAGATGTCTTAAATACAAGGAATTACAAAGTGTGAT
TTTTGTCTTTAAGACCCGGAAGAATCCTTTGTGCTTCAGTGTGTATCTGTGCCACACTTG
ACTCCTTAGTAGATGTGGCTCCAGTGCAGTAGACATTAACTGCCATCATCTCTTCTGTTT
TGTGCCAAATAGAGCCATTTAGTCAGGTGAAATTAAATGTCAACTTAAAATACTTTCAAA
GAAACTTGGATTTCAAAAACTTGTACAATAAAAAAGGCCCCCTGAAGAAATCTTCAAAGT
ACTAGTTAACACATGGCAAATGCAGGAAACTGAAATCAGTAATATGTTGTATGGTAAACT
TTTCCACCTAATGTGTTGTGAGTTTGCTTCAGAAACATTCTTCCAGAAAGTTTTGTACCC
TCCATTTGGAATTCAAACAGTGAATTTCATGTATTTTATCATGACAAATAAATTAATGTG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               5-815, gnl|bosTau2|chr10 (51624332-51625149)
               

               
               5-815, gnl|Hg17|chr14 (64019065-64017976)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-815, gnl|bosTau2|chr10 (51624332-51625149)
               

               
               5-815, gnl|Hg17|chr14 (64019065-64017976)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               liv (0.585137)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	5-815, gnl\|bosTau2\|chr10 (51624332-51625149)
	5-815, gnl\|Hg17\|chr14 (64019065-64017976)

	liv (0.585137)
	ret (0.3862)
	gul (0.355177)
	thg (0.253582)
	tra (0.246184)
	cbe (0.239234)
	fcc (0.197785)
	sin (0.174948)
	csp (0.161186)
	fat (0.147427)
	lnt (0.142308)
	pgl (0.118483)
	cty (0.10408)