Non-Coding RNA Search

Ss1.1-rret22_h15.5

Sequence:


               
               CTAAGGTCATTTGTGTAGATGAGTGATTAAAGATACTAAAATCATGTGATAATTCTGTTA
TTGGAGAACATCTTTTAAGTTGTCTCTGTTTTAATGAAGAAGAAAGAGAAAGTATCTGTG
CACCTAGGGTGATAATTTGACCCTCTAGTATAACCAAATTCATGGTCTAACAAGCCTCTT
CACGTGGCTGTTTGAATACTTAAATTTCACGTACCTCACATTGCACAGTTGTAATTCCTG
GTCTAACAATGCTCTTTTTTCATGTCTTGATATTTGTAAATACATTCTGATACTTTCTTT
GTTAAAATATATTTTTAAATGATTTTAACTGCATTTCACTGCCATGGCCATCATTTTCAT
TAGTGATGCTAACATGCTCCGTCATACATGAGGCTTATTAAAAAGTCATCATTAAGGTCT
CAGAACTGGAAGGAACCTTAAAGATCACTTAATTCCATCTACCACCTGATTATGAACTCC
CATTTCTTATTTTATAATTCTTCCCAGAACTTTTTTTCATAAATGATGCTTATTAGAGAT
TTGGTGATCATTAGATGTGTCAAATAAGACAAGGCATAGGTGTGTCTTCTCCAGGACTCA
TGTGGTTGGCTAAAGTCAAAACCAGGAAAAGATTTAGTAAAGGCACAGTCGCTCCCATAA
GTGGTACACGTAGCTGGAGTGTGGCATGTTTCTGGTGAAGAGATGTCGAGACAATCTTTG
AATTCCTTTAGAAAATTTGAAGGGAAGAACATACTCCAGTCACATTAGCAGTTATTTCAC
TTAGCGGTGCTACCAGGCCAATCCTGGTATAAGGCCCCGAAACGAGTTGTATTTTAAATT
GTTTTCATCCTCTGTGCAATTCAAGTTCAAAACCTTCGTGGGTCAAGAAAGTTTGAAGAG
TTTACTTTCTGAAGATTTAATAGGTTAATTTATGCATTTTCTTCAAATACTTTCAAATGA
AGAGTTAGTATCTTTGTCAAAGTAGCTACCATGTGCTTGTAAATAATACAAGGTGTATTA
TTTAATTATATTAAACATGTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGGTCATTTGTGTAGATGAGTGATTAAAGATACTAAAATCATGTGATAATTCTGTTA
TTGGAGAACATCTTTTAAGTTGTCTCTGTTTTAATGAAGAAGAAAGAGAAAGTATCTGTG
CACCTAGGGTGATAATTTGACCCTCTAGTATAACCAAATTCATGGTCTAACAAGCCTCTT
CACGTGGCTGTTTGAATACTTAAATTTCACGTACCTCACATTGCACAGTTGTAATTCCTG
GTCTAACAATGCTCTTTTTTCATGTCTTGATATTTGTAAATACATTCTGATACTTTCTTT
GTTAAAATATATTTTTAAATGATTTTAACTGCATTTCACTGCCATGGCCATCATTTTCAT
TAGTGATGCTAACATGCTCCGTCATACATGAGGCTTATTAAAAAGTCATCATTAAGGTCT
CAGAACTGGAAGGAACCTTAAAGATCACTTAATTCCATCTACCACCTGATTATGAACTCC
CATTTCTTATTTTATAATTCTTCCCAGAACTTTTTTTCATAAATGATGCTTATTAGAGAT
TTGGTGATCATTAGATGTGTCAAATAAGACAAGGCATAGGTGTGTCTTCTCCAGGACTCA
TGTGGTTGGCTAAAGTCAAAACCAGGAAAAGATTTAGTAAAGGCACAGTCGCTCCCATAA
GTGGTACACGTAGCTGGAGTGTGGCATGTTTCTGGTGAAGAGATGTCGAGACAATCTTTG
AATTCCTTTAGAAAATTTGAAGGGAAGAACATACTCCAGTCACATTAGCAGTTATTTCAC
TTAGCGGTGCTACCAGGCCAATCCTGGTATAAGGCCCCGAAACGAGTTGTATTTTAAATT
GTTTTCATCCTCTGTGCAATTCAAGTTCAAAACCTTCGTGGGTCAAGAAAGTTTGAAGAG
TTTACTTTCTGAAGATTTAATAGGTTAATTTATGCATTTTCTTCAAATACTTTCAAATGA
AGAGTTAGTATCTTTGTCAAAGTAGCTACCATGTGCTTGTAAATAATACAAGGTGTATTA
TTTAATTATATTAAACATGTTTTA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-513, gnl|bosTau2|chr1 (45895935-45895428)
               

               
               1-513, gnl|Hg17|chr3 (194897972-194898463)
               

               
               1-513, gnl|Mm7|chr16 (29324773-29325269)
               


               
               537-792, gnl|bosTau2|chr1 (45895106-45894852)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-513, gnl|bosTau2|chr1 (45895935-45895428)
               

               
               1-513, gnl|Hg17|chr3 (194897972-194898463)
               

               
               1-513, gnl|Mm7|chr16 (29324773-29325269)
               


               
               537-792, gnl|bosTau2|chr1 (45895106-45894852)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ski (0.29347)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	1-513, gnl\|bosTau2\|chr1 (45895935-45895428)
	1-513, gnl\|Hg17\|chr3 (194897972-194898463)
	1-513, gnl\|Mm7\|chr16 (29324773-29325269)

	537-792, gnl\|bosTau2\|chr1 (45895106-45894852)

	ski (0.29347)
	cbe (0.239234)
	aor (0.195274)
	fbs (0.175346)
	kid (0.129735)
	ret (0.128733)
	spc (0.113366)