Non-Coding RNA Search

Ss1.1-rret22_i20.5

Sequence:


               
               GAGGGGACCCACCTATAGGCTTAAAGGCATCTGTTGGTGTCCCAGTATAAGCTGTAGTTC
CTTGAGTGAAAGTTGACTGTAAGACTACCATCTTAAATATATTTTTGCAATGAAAAAAAT
AATTTCTTAGAAACATGTCCTATTCATAAATTTTCTGAAAATGATCCCAGCAGTTAAGCT
TTCTGGATGGTAAGAAGATAATTTCTAAAAGGCAAGTGCTATGACACCATGTATGAATGT
AACTCTCTTAGTAATTTACCTCTGACTCTTTGGTGTCTTAACACTTTGGTTTATATCTCA
GGGGTTGTCTGCAAACCAAAACTGACATAATCTGTGGTTAGCCTTTTTTTTTTTCCCCCT
TTAACAGACTGCTTTGCTTTTGTTTTTTTCCTTCTTTCCTCTGTTGTCTTATATGGGTTA
ATAACTAGTCTCCATGAACTTCCCTTTGAAAGAGCCTGTAAAAGTTAGATGAGTCTAAAA
GTGCTCTTTGAAGTAGCAGCAAACTGGGAGTATATACTCTGTTATATAGAAATAAATTGT
CCTTGCTATTTTCTTACATTTAGCTTTGCTAAATTGTATATAATTTGAATTAAGACCATA
GGAAATTCACTTTCTGCATGGTAAAATGCCCCAGTACCTATTCCACTTTGCTTAATAATG
TACATATAGTGCATTATTTTTTCTATTTGTAGATGAATTTAGTGACAGATAATTGTCTGT
TCCCTGCTGAAACTGAAGAAATCTAGTTTTGCGTGAGCATTTTTGTGGTCTCATGGATAA
GGTACATGAAGATTTTTTGCAGCAGCATTAGTGGTTCAGCGGCTGCCTTTTATTATCAGT
GTGCTCATCTTTGACAATGATTGGACTAGACCTTTTCTAATAGAGTCTGAGGGTCTCAGA
CAATGAAAATGTGCTCTAACCAAGTAGCATGTAAATCAGTTGATTGTAAAACGTTTCACT
GGGAACTTATTTTAGCTATATTTTACTTCAGACAGATTATGAGAAAATAATCCACCTGTG
CATCAGTTAGGAGGTGCTGCAGGGTTTCTTACTATTTACATGAACATTTTATGCAGTCTT
TGATATAAATTTTCAGAAGACTATACTCTTTACTTTGAAGGACTATTTTTTAATTATACC
TCATGTAGCTAACTAGTATTCTAATACCTGGTAGAAAAACAGTGAGCCAGTCTTTATCCA
ACACAATTTAGACTCTATGTTTTGTTTTGAACTAAAGGCATCATTGGAAAAGGTAGGAGG
TAGTAGTTTAGGATAGAACATACATGTCATATCCAGTAGCTCAAAAAAAGAAGTATTATC
TTCCTGTCTCCATTAATAAATTTAGCTGTGCAATATAGATAATTGTTTGCAGAAATTTCT
ACATAAGAGATTATAACTCCATTTTACAGGTTCTGAATGTTGAGAATCTATATTAAGGCT
TGTAAAGTTTTTCCTGTGAACAGTAAGTGATACATTTAAGCCGACTTTCTTTTCTAGTTT
ATGACTTAGATTCTTTATAAATTTAGTTCTTAAAGATGAGCTTCTAAGCTTAAAAATTTA
AAACAGCATTTCATTATGTTAATTTACTTATCTCAGATTTTAAGCACTCAATTCTGCTGT
GAGATTTTTTAGAATTTTTGTTTTAACAGAAAGGACATTCCTTTTTCCTTCTTGTTACAT
CCACAGAAGGGGTGGGAGAATGTCTAAAAATGAAATTCCTTGTCCTAGAGGGACAGAATA
TGCTAATAAAATTTCAAATGCTGGCACAATTTTACAGTAGAATTGGTCTTTTTTCAGACT
AATAAAATGAATGGTTGTCATGTTCACTACGAAAAAAAATCTAAATGACTGAAATTTATA
GAAATGAAAATTAGCAAGCAATTATTTTAGGGATGCTTTCAAATTTTACTTCATTTTTTT
GAAATGCTTGTGCCATATGCAGTTGCATTTCTTATTGCCAAGATCTAATAGAACTTCTGG
TTTCATTTCTTACCTTTTTTTTTAAATGTGAATTTGTATTATAATTCATTCCTACGGCCT
TACAAGATGGGTTTTATTTTGTGTGTTTGCAGCTGACACTGTCCCTTTAATGCAAAATGC
CATAAACGATTTGACTGAAGTCCTGCCCGTCTCTAATGGGAAATACCTGGTTTTTCCATA
GAATTATCCTACTGTGTATGTTTCAGCATATTTTACTTTTGCTCCAGCAGTTTAGTGTGA
AAAAGCTCCTGTGGATAAAGTGGATTTGTCATGTGGTTAATCTTGTTTTAGCCAATTCAT
TAACTGTGTACTGATACTGATGCTGTGTTTGTTTGTTTGTTTTTTAAGAAAAAATGAATT
TTATTCCAGGTGAACTTTTTTTTTAAATAATAATGTTTGTCTAAAATAAAAACTACATGA
TGAAAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGGACCCACCTATAGGCTTAAAGGCATCTGTTGGTGTCCCAGTATAAGCTGTAGTTC
CTTGAGTGAAAGTTGACTGTAAGACTACCATCTTAAATATATTTTTGCAATGAAAAAAAT
AATTTCTTAGAAACATGTCCTATTCATAAATTTTCTGAAAATGATCCCAGCAGTTAAGCT
TTCTGGATGGTAAGAAGATAATTTCTAAAAGGCAAGTGCTATGACACCATGTATGAATGT
AACTCTCTTAGTAATTTACCTCTGACTCTTTGGTGTCTTAACACTTTGGTTTATATCTCA
GGGGTTGTCTGCAAACCAAAACTGACATAATCTGTGGTTAGCCTTTTTTTTTTTCCCCCT
TTAACAGACTGCTTTGCTTTTGTTTTTTTCCTTCTTTCCTCTGTTGTCTTATATGGGTTA
ATAACTAGTCTCCATGAACTTCCCTTTGAAAGAGCCTGTAAAAGTTAGATGAGTCTAAAA
GTGCTCTTTGAAGTAGCAGCAAACTGGGAGTATATACTCTGTTATATAGAAATAAATTGT
CCTTGCTATTTTCTTACATTTAGCTTTGCTAAATTGTATATAATTTGAATTAAGACCATA
GGAAATTCACTTTCTGCATGGTAAAATGCCCCAGTACCTATTCCACTTTGCTTAATAATG
TACATATAGTGCATTATTTTTTCTATTTGTAGATGAATTTAGTGACAGATAATTGTCTGT
TCCCTGCTGAAACTGAAGAAATCTAGTTTTGCGTGAGCATTTTTGTGGTCTCATGGATAA
GGTACATGAAGATTTTTTGCAGCAGCATTAGTGGTTCAGCGGCTGCCTTTTATTATCAGT
GTGCTCATCTTTGACAATGATTGGACTAGACCTTTTCTAATAGAGTCTGAGGGTCTCAGA
CAATGAAAATGTGCTCTAACCAAGTAGCATGTAAATCAGTTGATTGTAAAACGTTTCACT
GGGAACTTATTTTAGCTATATTTTACTTCAGACAGATTATGAGAAAATAATCCACCTGTG
CATCAGTTAGGAGGTGCTGCAGGGTTTCTTACTATTTACATGAACATTTTATGCAGTCTT
TGATATAAATTTTCAGAAGACTATACTCTTTACTTTGAAGGACTATTTTTTAATTATACC
TCATGTAGCTAACTAGTATTCTAATACCTGGTAGAAAAACAGTGAGCCAGTCTTTATCCA
ACACAATTTAGACTCTATGTTTTGTTTTGAACTAAAGGCATCATTGGAAAAGGTAGGAGG
TAGTAGTTTAGGATAGAACATACATGTCATATCCAGTAGCTCAAAAAAAGAAGTATTATC
TTCCTGTCTCCATTAATAAATTTAGCTGTGCAATATAGATAATTGTTTGCAGAAATTTCT
ACATAAGAGATTATAACTCCATTTTACAGGTTCTGAATGTTGAGAATCTATATTAAGGCT
TGTAAAGTTTTTCCTGTGAACAGTAAGTGATACATTTAAGCCGACTTTCTTTTCTAGTTT
ATGACTTAGATTCTTTATAAATTTAGTTCTTAAAGATGAGCTTCTAAGCTTAAAAATTTA
AAACAGCATTTCATTATGTTAATTTACTTATCTCAGATTTTAAGCACTCAATTCTGCTGT
GAGATTTTTTAGAATTTTTGTTTTAACAGAAAGGACATTCCTTTTTCCTTCTTGTTACAT
CCACAGAAGGGGTGGGAGAATGTCTAAAAATGAAATTCCTTGTCCTAGAGGGACAGAATA
TGCTAATAAAATTTCAAATGCTGGCACAATTTTACAGTAGAATTGGTCTTTTTTCAGACT
AATAAAATGAATGGTTGTCATGTTCACTACGAAAAAAAATCTAAATGACTGAAATTTATA
GAAATGAAAATTAGCAAGCAATTATTTTAGGGATGCTTTCAAATTTTACTTCATTTTTTT
GAAATGCTTGTGCCATATGCAGTTGCATTTCTTATTGCCAAGATCTAATAGAACTTCTGG
TTTCATTTCTTACCTTTTTTTTTAAATGTGAATTTGTATTATAATTCATTCCTACGGCCT
TACAAGATGGGTTTTATTTTGTGTGTTTGCAGCTGACACTGTCCCTTTAATGCAAAATGC
CATAAACGATTTGACTGAAGTCCTGCCCGTCTCTAATGGGAAATACCTGGTTTTTCCATA
GAATTATCCTACTGTGTATGTTTCAGCATATTTTACTTTTGCTCCAGCAGTTTAGTGTGA
AAAAGCTCCTGTGGATAAAGTGGATTTGTCATGTGGTTAATCTTGTTTTAGCCAATTCAT
TAACTGTGTACTGATACTGATGCTGTGTTTGTTTGTTTGTTTTTTAAGAAAAAATGAATT
TTATTCCAGGTGAACTTTTTTTTTAAATAATAATGTTTGTCTAAAATAAAAACTACATGA
TGAAAATAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               559-677, + strand, RNAz p=0.580141
               

               
               1696-1802, - strand, RNAz p=0.999322

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-677, + strand, RNAz p=0.580141
               

               
               1696-1802, - strand, RNAz p=0.999322

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016530, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016530, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-2408, gnl|bosTau2|chr10 (31160333-31162739)
               

               
               15-2408, gnl|Hg17|chr15 (61344652-61347030)
               

               
               15-2408, gnl|Mm7|chr9 (66877532-66875131)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-2408, gnl|bosTau2|chr10 (31160333-31162739)
               

               
               15-2408, gnl|Hg17|chr15 (61344652-61347030)
               

               
               15-2408, gnl|Mm7|chr9 (66877532-66875131)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               sin (0.524843)
               

               
               ret (0.3862)
               

               
               duo (0.345602)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               ret (0.3862)
               

               
               duo (0.345602)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	559-677, + strand, RNAz p=0.580141
	1696-1802, - strand, RNAz p=0.999322

	15-2408, gnl\|bosTau2\|chr10 (31160333-31162739)
	15-2408, gnl\|Hg17\|chr15 (61344652-61347030)
	15-2408, gnl\|Mm7\|chr9 (66877532-66875131)

	sin (0.524843)
	ret (0.3862)
	duo (0.345602)
	cty (0.31224)
	bfe (0.299715)
	fat (0.294855)
	liv (0.292569)
	lin (0.291206)
	spl (0.286369)
	kid (0.259471)
	thg (0.253582)
	tes (0.207814)
	aor (0.195274)
	nep (0.183925)
	mgm (0.180343)
	fty (0.17584)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	lyg (0.133103)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)