Non-Coding RNA Search

Ss1.1-rret22_j1.5

Sequence:


               
               GTGTATATTCTATGATCCAAGCATAGAATATGCTTCCATCTCTAGCAAGTATTTTAGATG
TATCAAAAAGGAAAACATATTGCCCTTCAGTGGATGGCAGAATGTTTCAAGGACAATTTC
ACTGTGAGCTCCTACTTAGTAAGAAATCTTTTTTACATGAATATACGTATTCTTTTAGAT
GTCAGCCCTTGAATGTGTACTGCTTATTATATGAAGTGAGAGATTCTTGAAGTTCCCAAG
AACTGCCCTAGAAAGAAAATTGATTTTGAAATGAGATGATCAGTGTCTTCATTTCCCTGA
GAAATCTCATAAAACTGGACACTCCACAAACTTTAGGTACTAGAGAAATTGAATGTGAGG
CTGACACTATTCTCCAAATGGAATGGAACTGGTTGATGGCCAAGATATGGATGGTACAGG
TCAGGCATATTACCATTCTGCAGCTGAAACAGGACTTTTGTTTGTATATGTTGAATCTCT
GCTAATTAAAAATGTCTCAACACGTCCTGCATTGGGGTAGAAAATGAACAGCAAGTTATT
TTTTTAACTACATAAATATTTTCAATAAAATTAAAAGCAAGAAGCTGTTTTACATTTCAT
TATCCAAATGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTATATTCTATGATCCAAGCATAGAATATGCTTCCATCTCTAGCAAGTATTTTAGATG
TATCAAAAAGGAAAACATATTGCCCTTCAGTGGATGGCAGAATGTTTCAAGGACAATTTC
ACTGTGAGCTCCTACTTAGTAAGAAATCTTTTTTACATGAATATACGTATTCTTTTAGAT
GTCAGCCCTTGAATGTGTACTGCTTATTATATGAAGTGAGAGATTCTTGAAGTTCCCAAG
AACTGCCCTAGAAAGAAAATTGATTTTGAAATGAGATGATCAGTGTCTTCATTTCCCTGA
GAAATCTCATAAAACTGGACACTCCACAAACTTTAGGTACTAGAGAAATTGAATGTGAGG
CTGACACTATTCTCCAAATGGAATGGAACTGGTTGATGGCCAAGATATGGATGGTACAGG
TCAGGCATATTACCATTCTGCAGCTGAAACAGGACTTTTGTTTGTATATGTTGAATCTCT
GCTAATTAAAAATGTCTCAACACGTCCTGCATTGGGGTAGAAAATGAACAGCAAGTTATT
TTTTTAACTACATAAATATTTTCAATAAAATTAAAAGCAAGAAGCTGTTTTACATTTCAT
TATCCAAATGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               507-612, + strand, RNAz p=0.524895

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               507-612, + strand, RNAz p=0.524895

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-612, gnl|bosTau2|chr18 (22751478-22750876)
               

               
               4-612, gnl|Hg17|chr16 (56473194-56472589)
               

               
               4-612, gnl|Mm7|chr8 (93828795-93828200)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-612, gnl|bosTau2|chr18 (22751478-22750876)
               

               
               4-612, gnl|Hg17|chr16 (56473194-56472589)
               

               
               4-612, gnl|Mm7|chr8 (93828795-93828200)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.643666)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)

	4-612, gnl\|bosTau2\|chr18 (22751478-22750876)
	4-612, gnl\|Hg17\|chr16 (56473194-56472589)
	4-612, gnl\|Mm7\|chr8 (93828795-93828200)