Non-Coding RNA Search

Ss1.1-rret22_j20.5

Sequence:


               
               GGAAAACACTAGAGTTTCTTTGGCAATATGAATTTCATTTGGTTAAAGAAAACATGGTTA
AAACTTCACTGTGCTGTTGGGTCTGCCAGGACAATTATTTAAAACGAACCAGAAGCCTAA
ATGGTTTACATGATGGTGGATCACGTCCTGTTCTGACCAGACAGGATGAGTGCAGGAAGC
AGGCAAGGTATCTAAACAGGGCAAATGAATAAAAAGTGATAACATGGATTAGAATATCAT
TTTCAACAGCTCAGCTACACCCTAAAACCTGTCAAACTATTAGTGTATCTTGACTTTTTA
CCTTCTTATTTATTATCTCCTTATAGTCTAAGCCATCGTCTTTCCTTTTTTTCCTTGTAG
CACTAACCCTGCTGTATTTTGCACCCTTGGTTTGGAAATCTACTTAAAAGTATCCTTAAA
GAGAGATCTTAAACTCCATCAGCCACCAAAGTTGTTCCCTTCACCACGATTTGCCCTAGA
AGGAACAGACAAGTAAATTATTTATGACGCCATCCTATGTGCTTTCTGAGTCTACACTGG
CACTTACATTCCTAAGAGGCTGTGGGGGGATCTATTTTTTTGAAGCTAGCATTTTCTGGC
ATTTAAGTTTGTAGATAATGAATGTTTCCTGAGTTATTCACTAGATAATATTTATTTAAA
TTATTTCTCCCTTCTTTCACGCAAATTCCTTGGGTTCTGTACATGTGCTTACAAACCCTC
CCTAAGATGTTATTTGGAAAGGAGTTCATAATTTTGCTAGGAATTCCTGAATTTTGGGGT
GAGGGTTGGTGCAGAGTTACCTGTAACAGTTTTATAAAAAGCAGCAATAATTTGAATGGC
TATGCAAATTAATACTTTTAGATGTTTTTCCCCTTCACTCTAAGATGAGCCAGTTATTTT
TTTGGAATCTGTTGTTTATGTTGGGAAGTATGGTACCCATGAACTATTATGGTATTGTTC
AGAGAGACTTTATAATTGAATTAAAATTTGGAAATGCAGTATAATTGGACAGAACCCACT
GTCCAATCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAACACTAGAGTTTCTTTGGCAATATGAATTTCATTTGGTTAAAGAAAACATGGTTA
AAACTTCACTGTGCTGTTGGGTCTGCCAGGACAATTATTTAAAACGAACCAGAAGCCTAA
ATGGTTTACATGATGGTGGATCACGTCCTGTTCTGACCAGACAGGATGAGTGCAGGAAGC
AGGCAAGGTATCTAAACAGGGCAAATGAATAAAAAGTGATAACATGGATTAGAATATCAT
TTTCAACAGCTCAGCTACACCCTAAAACCTGTCAAACTATTAGTGTATCTTGACTTTTTA
CCTTCTTATTTATTATCTCCTTATAGTCTAAGCCATCGTCTTTCCTTTTTTTCCTTGTAG
CACTAACCCTGCTGTATTTTGCACCCTTGGTTTGGAAATCTACTTAAAAGTATCCTTAAA
GAGAGATCTTAAACTCCATCAGCCACCAAAGTTGTTCCCTTCACCACGATTTGCCCTAGA
AGGAACAGACAAGTAAATTATTTATGACGCCATCCTATGTGCTTTCTGAGTCTACACTGG
CACTTACATTCCTAAGAGGCTGTGGGGGGATCTATTTTTTTGAAGCTAGCATTTTCTGGC
ATTTAAGTTTGTAGATAATGAATGTTTCCTGAGTTATTCACTAGATAATATTTATTTAAA
TTATTTCTCCCTTCTTTCACGCAAATTCCTTGGGTTCTGTACATGTGCTTACAAACCCTC
CCTAAGATGTTATTTGGAAAGGAGTTCATAATTTTGCTAGGAATTCCTGAATTTTGGGGT
GAGGGTTGGTGCAGAGTTACCTGTAACAGTTTTATAAAAAGCAGCAATAATTTGAATGGC
TATGCAAATTAATACTTTTAGATGTTTTTCCCCTTCACTCTAAGATGAGCCAGTTATTTT
TTTGGAATCTGTTGTTTATGTTGGGAAGTATGGTACCCATGAACTATTATGGTATTGTTC
AGAGAGACTTTATAATTGAATTAAAATTTGGAAATGCAGTATAATTGGACAGAACCCACT
GTCCAATCCAGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               65-1032, gnl|bosTau2|chr11 (58192559-58191589)
               

               
               65-1032, gnl|Hg17|chr12 (53708970-53709944)
               

               
               65-1032, gnl|Mm7|chr10 (129779637-129778829)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-1032, gnl|bosTau2|chr11 (58192559-58191589)
               

               
               65-1032, gnl|Hg17|chr12 (53708970-53709944)
               

               
               65-1032, gnl|Mm7|chr10 (129779637-129778829)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               pgl (0.236967)
               

               
               eye (0.170503)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               eye (0.170503)
               

               
               ret (0.128733)

	65-1032, gnl\|bosTau2\|chr11 (58192559-58191589)
	65-1032, gnl\|Hg17\|chr12 (53708970-53709944)
	65-1032, gnl\|Mm7\|chr10 (129779637-129778829)