Non-Coding RNA Search

Ss1.1-rret22_k12.5

Sequence:


               
               AATCAAAATTCCCAAAATGAATAAGGTATCCCCTAGAAAATCATTATATTGAGAAATCTA
CAGGGTGGAAATGAGAAAACAAATTCTTTCTAAACAACTTTAGAGCTGACCTGAAGAAGC
AAACTCAGTGCATCAGTCAGTTCCCATTGCTATAACAAAATGTTACAGGCTGGATGGCTT
ATAAACAACAGAAATTTATTTTTCACGGTGTGGAAGCTAGAAATCCAAGATCAAGGTGAC
AGTATGGTCAGGTTTTGATGAAAGCTCCCTTTTGGGTTGCAGATTCATATCCTCACATGG
TAGAAATAGAGCAAAAGAGCTCTCTGGGTCCCTTTTATAAGAGTATTAATCCCATCCAAG
AGCGTTCCACTCACCTGATCAAATTACTTCCCCAAAGCCTCAGTTTCTAATACCATCACA
GTGGGAGTTAGGGTTCCAATATATGAATTTGGGGAGGACAGAAACATTCAGTCCATAACT
TTCAATAAATGTAGTGACATTTCTGAATTCGGGACTTCCGTAAGATGTGAAGCAAAATAA
AAACAAAGATATTTTTCTGAGGAAGTTTTGATTTCTAAATAAAATTAAAACCCTAAAACT
TCTCTAACTTATTACCAATATTTCTCATCTTTATATTTGATGCTCACAGAGGAAGGAAAT
GGTGTTGGTTCTTATTCCTGACATCCGGAGTGACAGTGAACTAAATCGAATTACCCTCCT
TCCTAATTCTATGAAAAAGTTTTATGTCTTCTTATTTGTTTAAAATGTAACTACTTTACT
TTGATGTATTATATTTTTAAATAAAAATAAATATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAAAATTCCCAAAATGAATAAGGTATCCCCTAGAAAATCATTATATTGAGAAATCTA
CAGGGTGGAAATGAGAAAACAAATTCTTTCTAAACAACTTTAGAGCTGACCTGAAGAAGC
AAACTCAGTGCATCAGTCAGTTCCCATTGCTATAACAAAATGTTACAGGCTGGATGGCTT
ATAAACAACAGAAATTTATTTTTCACGGTGTGGAAGCTAGAAATCCAAGATCAAGGTGAC
AGTATGGTCAGGTTTTGATGAAAGCTCCCTTTTGGGTTGCAGATTCATATCCTCACATGG
TAGAAATAGAGCAAAAGAGCTCTCTGGGTCCCTTTTATAAGAGTATTAATCCCATCCAAG
AGCGTTCCACTCACCTGATCAAATTACTTCCCCAAAGCCTCAGTTTCTAATACCATCACA
GTGGGAGTTAGGGTTCCAATATATGAATTTGGGGAGGACAGAAACATTCAGTCCATAACT
TTCAATAAATGTAGTGACATTTCTGAATTCGGGACTTCCGTAAGATGTGAAGCAAAATAA
AAACAAAGATATTTTTCTGAGGAAGTTTTGATTTCTAAATAAAATTAAAACCCTAAAACT
TCTCTAACTTATTACCAATATTTCTCATCTTTATATTTGATGCTCACAGAGGAAGGAAAT
GGTGTTGGTTCTTATTCCTGACATCCGGAGTGACAGTGAACTAAATCGAATTACCCTCCT
TCCTAATTCTATGAAAAAGTTTTATGTCTTCTTATTTGTTTAAAATGTAACTACTTTACT
TTGATGTATTATATTTTTAAATAAAAATAAATATTG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               95-476, gnl|bosTau2|chr1 (67651105-67651502)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-476, gnl|bosTau2|chr1 (67651105-67651502)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               gul (0.355177)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               ski (0.146735)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               ski (0.146735)

	gul (0.355177)
	ret (0.257467)
	aor (0.195274)
	mcp (0.170648)
	mga (0.160205)
	ski (0.146735)