Non-Coding RNA Search

Ss1.1-rret22_p17.5

Sequence:


               
               TTTGTCAGCATATAAACCTTCATATTCTTTTTTAAGTTTCACAAAGAATGGTTGGTTTTT
TTGTTTGTTTTGGCCACGCCTGCAGCATGTGAAGTTCCTGGATCAGGAACTGAACCTGCA
CCACAGCAGCGAGTTTACGACAACACTTCGACCTGCTGTGCCACAAAGGAAATCCAAGAA
TGGTTGATTTGGATCATAATTTTTAGGGGCAAAAACATCATTAGTTTGGATCATATCTCT
CACATTAAAAAACTGATCACGTTTTACTTTTTCTCTGTGCACTATGGATTCTTTCGGTTG
ATACATCTGTTCCAAAAGAACCTTTGCAGACAAGATGGCTAAAGGTGACATTATGCAAAT
TCTGTATACTTGAAGAAGGATAGTGAAACAGAAGCTACCAATTTGCATAACGAGTATTAT
CTTTCAAACATCTTCAGGGCAAGTTCTCACCTATCAAAGGTACAGCATCTTGTAAATACT
GACATTTCTGGCAGATGTAATAGGCCTAGTTTCTTATGAATGAGGAAAGATTCTGAAATA
AAGACTAGTTATATTAAAAAAATGATCCTAATTCATTCTGAATTAGAACAAACTATGAAA
AATGTAAATACTAACAGGATATAAACTACTGTAAAATCTTCATTCTTCAAAACACTTTGG
TATTGAAGATCAGGAATGAAAAAATGAACCAATTGTCTATGATAAGAATAAATCAAGCAG
TCAAAAAGTTGTATAAAGTTGAAAATGCTTCACATTTTCTTAGGAAAAGCATGTATGTTT
TGATAGAGGAAATGAATACAATTAATCTCAAAGTTTGCTATAAAACGAAACTGTCACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTCAGCATATAAACCTTCATATTCTTTTTTAAGTTTCACAAAGAATGGTTGGTTTTT
TTGTTTGTTTTGGCCACGCCTGCAGCATGTGAAGTTCCTGGATCAGGAACTGAACCTGCA
CCACAGCAGCGAGTTTACGACAACACTTCGACCTGCTGTGCCACAAAGGAAATCCAAGAA
TGGTTGATTTGGATCATAATTTTTAGGGGCAAAAACATCATTAGTTTGGATCATATCTCT
CACATTAAAAAACTGATCACGTTTTACTTTTTCTCTGTGCACTATGGATTCTTTCGGTTG
ATACATCTGTTCCAAAAGAACCTTTGCAGACAAGATGGCTAAAGGTGACATTATGCAAAT
TCTGTATACTTGAAGAAGGATAGTGAAACAGAAGCTACCAATTTGCATAACGAGTATTAT
CTTTCAAACATCTTCAGGGCAAGTTCTCACCTATCAAAGGTACAGCATCTTGTAAATACT
GACATTTCTGGCAGATGTAATAGGCCTAGTTTCTTATGAATGAGGAAAGATTCTGAAATA
AAGACTAGTTATATTAAAAAAATGATCCTAATTCATTCTGAATTAGAACAAACTATGAAA
AATGTAAATACTAACAGGATATAAACTACTGTAAAATCTTCATTCTTCAAAACACTTTGG
TATTGAAGATCAGGAATGAAAAAATGAACCAATTGTCTATGATAAGAATAAATCAAGCAG
TCAAAAAGTTGTATAAAGTTGAAAATGCTTCACATTTTCTTAGGAAAAGCATGTATGTTT
TGATAGAGGAAATGAATACAATTAATCTCAAAGTTTGCTATAAAACGAAACTGTCACTAC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               336-838, gnl|bosTau2|chr16 (42525474-42524970)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-838, gnl|bosTau2|chr16 (42525474-42524970)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               gul (0.355177)
               

               
               ret (0.257467)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               ret (0.257467)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	gul (0.355177)
	ret (0.257467)
	tbr (0.154178)
	bfe (0.149858)
	liv (0.146284)
	ova (0.129132)
	med (0.116252)