Non-Coding RNA Search

Ss1.1-rret22_p19.5

Sequence:


               
               AAAATGGCCTCATTGTTTAAGAAAGGAAACATTTCTCTTCAGCTTGACTGTGGGCACTTC
TAGAGCAAGGATTGTGTCATTCTCATGTTTGCATCCCAGGCACAGTGCATGAGACATCAA
AAGTACTTAATAAATGTGGTCGAATGGATAATGATTAGTGTTATTTATGGGTTAGAAAAG
CATGTTTCTATTTAAGTAAGCTGTAAAAAGGTGTTATTGAGTATTTACTGTAAATATATG
TCAGCATAAAAAATAATAACTTGGAAGGTCTTTTGTGTCCCTGGTATGTTATCATCTTGA
TGAAAATAATCCATTTTGGTTTTTGAAGAGCAATTAGAAAAATGAATTATTCTGAGGATT
TGAAGAAAATGTTCTGTGTTGTCACATTGTTCAACAGTAAAACTTTCAGTGTTCCAACTG
CATTGTTTACATTTGTGAGAGATGTTTTTAATCACTTACAGTCTGTAAGAATGTATATAT
TCTTTTCAGCATCTCAGTTTGAAAAGACATGCAGGTTAAACTTGACCTTTTGATAATCGC
CCTTATAGGTCATTATCTGTTCTAATGGTAACGTGTAAACATGCTTCATGGATATGTGGC
TCTCAGTCATCAGTTTGTCCTGTGGTTATTTATTGAATGTCCACATACTAATGGTGCACA
GGTGTTTTTTTTCTATAAATCTTTCAACTGAGATGTAATTCATTCTTAGGCTTTAACTTG
AAGATATCATAGTTGCTGGCATTTGATGTTTAGCAATAAAAGAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGGCCTCATTGTTTAAGAAAGGAAACATTTCTCTTCAGCTTGACTGTGGGCACTTC
TAGAGCAAGGATTGTGTCATTCTCATGTTTGCATCCCAGGCACAGTGCATGAGACATCAA
AAGTACTTAATAAATGTGGTCGAATGGATAATGATTAGTGTTATTTATGGGTTAGAAAAG
CATGTTTCTATTTAAGTAAGCTGTAAAAAGGTGTTATTGAGTATTTACTGTAAATATATG
TCAGCATAAAAAATAATAACTTGGAAGGTCTTTTGTGTCCCTGGTATGTTATCATCTTGA
TGAAAATAATCCATTTTGGTTTTTGAAGAGCAATTAGAAAAATGAATTATTCTGAGGATT
TGAAGAAAATGTTCTGTGTTGTCACATTGTTCAACAGTAAAACTTTCAGTGTTCCAACTG
CATTGTTTACATTTGTGAGAGATGTTTTTAATCACTTACAGTCTGTAAGAATGTATATAT
TCTTTTCAGCATCTCAGTTTGAAAAGACATGCAGGTTAAACTTGACCTTTTGATAATCGC
CCTTATAGGTCATTATCTGTTCTAATGGTAACGTGTAAACATGCTTCATGGATATGTGGC
TCTCAGTCATCAGTTTGTCCTGTGGTTATTTATTGAATGTCCACATACTAATGGTGCACA
GGTGTTTTTTTTCTATAAATCTTTCAACTGAGATGTAATTCATTCTTAGGCTTTAACTTG
AAGATATCATAGTTGCTGGCATTTGATGTTTAGCAATAAAAGAATAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-692, gnl|bosTau2|chrX (38757726-38757031)
               

               
               2-692, gnl|Hg17|chrX (21662395-21663118)
               

               
               2-692, gnl|Mm7|chrX (152322954-152322285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-692, gnl|bosTau2|chrX (38757726-38757031)
               

               
               2-692, gnl|Hg17|chrX (21662395-21663118)
               

               
               2-692, gnl|Mm7|chrX (152322954-152322285)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ret (0.257467)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

	2-692, gnl\|bosTau2\|chrX (38757726-38757031)
	2-692, gnl\|Hg17\|chrX (21662395-21663118)
	2-692, gnl\|Mm7\|chrX (152322954-152322285)

	ret (0.257467)
	sag (0.182715)
	gul (0.177588)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	jca (0.11396)