Non-Coding RNA Search

Ss1.1-rret22_p5.5

Sequence:


               
               AAACGCTTAATTACTAAATGTCAAACCAAACTTTTGTTCAAACCAGGGATTATCATCTAA
GTAATCGTTGTAATTGTATGCGTATATGTATAACGGTTCAAAGGTTCTCAAGTTTTATGA
ACTTTAACATTTTCATTTGGTATAAGTAATTACTACTGTTTCCGATTTTATAATGAGAAC
ACCTATCTCTAATTCACCAAGGGCTCTCAGCCAAATAACATTGCAGAGATTGTTATCTAT
TAAAAGCTTACATGACAATAAAGCGATTACTTATAGTAGTGACTGCAGTTTAACAGAGCA
TAAAATACTTAGAGTTTCTATTTAAAATTAGAGTATGGGATAATAATATAGAGGAGGTAT
ACCTTGTTGCTTCTTCTGTTTAATTATATTTCAGCCCTGCACAAACACCTGACTGAAGAG
AAAGTGAAAAAAGAGAAAATGTTGTCATTAACGTTCAGATATTCATATATTTTAAGTACT
TTTATTTTACTTATTCTGAGCTACATATTGCCCCCCAAAAGAAGATTGACAAAACAATTT
TATTCTGTATCTTAATCCTGGTATCTATTTTATGCTCAAAAGTATTACGTAGCATTGCAT
ATAAGCTGATCAACATTGTGTTTGACTAAGTAAAAATAGCTTTAAGGAACAGATTGACCA
GAGTATTTGATGCATCCATTTCTTTATTTAGATAAAATGCAAACTCATTTTTTTAATTGT
AAATATTCATTAAAACACACTTTTCAAGGAAAATCTGGAAGTTACAAAAAAGTGGAAATT
ATATAATAAAATCATACAGAGCTCGTCTAAGCTTAGCTGTTGGTCTTTTCCATCATTTTC
CCCCTGTGGATTTTTATTGTAATTATTATGTCTTTGTGGGTAATTCCTCGATAAAACTAG
ATATCTCAAAGAATAAAAATGCCAGAAAATAACATGGAATATGTGACTATAGGTAAACAT
TAGTCTTTTGGCTTTTTGACATGTGGCACATGAGCATAATTCTACAAAGAAGGCAGTTTC
ACAGTTTCAACATTAGATCACTGCATTCCTTTTGATGACGTCCTAAAAGACTATTTTCCC
ATTGGTTGCTGTGAAAGTGCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGCTTAATTACTAAATGTCAAACCAAACTTTTGTTCAAACCAGGGATTATCATCTAA
GTAATCGTTGTAATTGTATGCGTATATGTATAACGGTTCAAAGGTTCTCAAGTTTTATGA
ACTTTAACATTTTCATTTGGTATAAGTAATTACTACTGTTTCCGATTTTATAATGAGAAC
ACCTATCTCTAATTCACCAAGGGCTCTCAGCCAAATAACATTGCAGAGATTGTTATCTAT
TAAAAGCTTACATGACAATAAAGCGATTACTTATAGTAGTGACTGCAGTTTAACAGAGCA
TAAAATACTTAGAGTTTCTATTTAAAATTAGAGTATGGGATAATAATATAGAGGAGGTAT
ACCTTGTTGCTTCTTCTGTTTAATTATATTTCAGCCCTGCACAAACACCTGACTGAAGAG
AAAGTGAAAAAAGAGAAAATGTTGTCATTAACGTTCAGATATTCATATATTTTAAGTACT
TTTATTTTACTTATTCTGAGCTACATATTGCCCCCCAAAAGAAGATTGACAAAACAATTT
TATTCTGTATCTTAATCCTGGTATCTATTTTATGCTCAAAAGTATTACGTAGCATTGCAT
ATAAGCTGATCAACATTGTGTTTGACTAAGTAAAAATAGCTTTAAGGAACAGATTGACCA
GAGTATTTGATGCATCCATTTCTTTATTTAGATAAAATGCAAACTCATTTTTTTAATTGT
AAATATTCATTAAAACACACTTTTCAAGGAAAATCTGGAAGTTACAAAAAAGTGGAAATT
ATATAATAAAATCATACAGAGCTCGTCTAAGCTTAGCTGTTGGTCTTTTCCATCATTTTC
CCCCTGTGGATTTTTATTGTAATTATTATGTCTTTGTGGGTAATTCCTCGATAAAACTAG
ATATCTCAAAGAATAAAAATGCCAGAAAATAACATGGAATATGTGACTATAGGTAAACAT
TAGTCTTTTGGCTTTTTGACATGTGGCACATGAGCATAATTCTACAAAGAAGGCAGTTTC
ACAGTTTCAACATTAGATCACTGCATTCCTTTTGATGACGTCCTAAAAGACTATTTTCCC
ATTGGTTGCTGTGAAAGTGCAAGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-560, gnl|bosTau2|chr3 (49570532-49569955)
               

               
               1-560, gnl|Hg17|chr1 (68607053-68606446)
               


               
               619-1014, gnl|bosTau2|chr3 (49569956-49569547)
               

               
               619-1014, gnl|Hg17|chr1 (68606447-68606023)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr3 (49570532-49569955)
               

               
               1-560, gnl|Hg17|chr1 (68607053-68606446)
               


               
               619-1014, gnl|bosTau2|chr3 (49569956-49569547)
               

               
               619-1014, gnl|Hg17|chr1 (68606447-68606023)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ret (1.67353)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.67353)
               

               
               pgl (0.118483)

	1-560, gnl\|bosTau2\|chr3 (49570532-49569955)
	1-560, gnl\|Hg17\|chr1 (68607053-68606446)

	619-1014, gnl\|bosTau2\|chr3 (49569956-49569547)
	619-1014, gnl\|Hg17\|chr1 (68606447-68606023)