Ss1.1-rret22_p9.5
|
TCCTAGGCTAGGGGTCGCATCGGAGCTGCAGCTGCCAGCCTGTGCCACAGCAATGCCAGA
TCTTAGCCGTGTCTGACTATGCTGCAGCTCATGGCAACGCCGGATCCTTAACCCGCTGAG
CAAGGCCAGGGATCGAACCCGCAACCTCATGGATACTAGTTGGGTTCATTACTACCAAGC
CACAATGGGAACTCCCTAAGAGACTACCTGTGAAACCAGATTCTTGAATGGCCAGGATCC
TGTATGGGAACCAGAAGCCTTTCCCCCAGGAGATGCTAAGTTCCAGTTCTGCACAGAGGG
GGACGTCCAGTCCACGGTAGCCTTTCTCTCTGGGCTTTGAGAGGACGACCAGCCCAGGGC
TTGGGTGTTTGCAGCCCGTGGGGGTTTGTGAGAGGAGCTAGCTGGATGCTGTGACAGCAT
CTGAAAGTTGGTCAGCACCTTCCTGTAAACTCTCGCCCTACTTCTAACTGCTCTATCAAT
ATATACATATATTTATATCTATAAAGTGACTAGTTTAACTGGCATCCCGCTTGAGCCTGA
GACTTGCCATAAAAAACTGCTGAGTACTTGGCACACACTTTCATAGTTTTGTTCTCCATC
TGTTTGGGGTAGGTGTTGAGCAAGGCAAATGTATCTTGATTTCAGATGGGCTTTCGATGC
ACTGTTGCCAAGGAAGGCTTTTTCTGATTTTTTGACAAACGAACTTTTGCACACTTTAAT
TGATGTCTTTCGGCAACTTAACGACACATTGAAAATTAGCTACTGTACATATTTTTATAT
TCTCTTTATAAATGCATGTCTGACTGTACTTGTAACCATATTGTAACGCGTGGCCGTCCA
GCAGGCCTCGTGCTGCTGTGGCCCGTCGGAGTAGCAGCATATTAGCAGCCCCTCAGCATA
CTGGGAACTTCTTCCTAAACCAAGAATGTAAATTTGGTCAGGTCTGCTCTTCGTTCATTC
AATTATTTTAAACATTTGAATTAATTACTGTATATCCTGAAATACATTTATCCTTTTGGC
AGTGACTCGATTCCACGAATGTGTCTTAATATCCCTTCAGCTGGCGGTTACTCTTTTCCT
TTTCAATCCCTTGAAGTTGCCCTATAGGAGACAGAAATACTTTGCTGTCCGTATCCCTCG
GAGTCTGAAGGTAGTGGCATGGGTGGAGTGTGTGTTCTTTCTCCAACTCTATCATAATGA
TCATTAAACACGTCTGTAGCAAAGATGGTGGTAGTTGTTTTGTTCCCGAAGTCACCCTTC
ACCGTGGCGATTTGCAAAGGACATGTACCTGAACGTTGCTGTAAATCTTGAGATAAAACT
GTTTGGAGATTTAACCACCTCTCTGATGGGGGACCAACTCTATGGAAATTGTAAATAAGT
TTTATTTATAAACCTGGCACTGTATTCAATAAACATTTCTGCAGCCTTTCATCTCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCTAGGCTAGGGGTCGCATCGGAGCTGCAGCTGCCAGCCTGTGCCACAGCAATGCCAGA
TCTTAGCCGTGTCTGACTATGCTGCAGCTCATGGCAACGCCGGATCCTTAACCCGCTGAG
CAAGGCCAGGGATCGAACCCGCAACCTCATGGATACTAGTTGGGTTCATTACTACCAAGC
CACAATGGGAACTCCCTAAGAGACTACCTGTGAAACCAGATTCTTGAATGGCCAGGATCC
TGTATGGGAACCAGAAGCCTTTCCCCCAGGAGATGCTAAGTTCCAGTTCTGCACAGAGGG
GGACGTCCAGTCCACGGTAGCCTTTCTCTCTGGGCTTTGAGAGGACGACCAGCCCAGGGC
TTGGGTGTTTGCAGCCCGTGGGGGTTTGTGAGAGGAGCTAGCTGGATGCTGTGACAGCAT
CTGAAAGTTGGTCAGCACCTTCCTGTAAACTCTCGCCCTACTTCTAACTGCTCTATCAAT
ATATACATATATTTATATCTATAAAGTGACTAGTTTAACTGGCATCCCGCTTGAGCCTGA
GACTTGCCATAAAAAACTGCTGAGTACTTGGCACACACTTTCATAGTTTTGTTCTCCATC
TGTTTGGGGTAGGTGTTGAGCAAGGCAAATGTATCTTGATTTCAGATGGGCTTTCGATGC
ACTGTTGCCAAGGAAGGCTTTTTCTGATTTTTTGACAAACGAACTTTTGCACACTTTAAT
TGATGTCTTTCGGCAACTTAACGACACATTGAAAATTAGCTACTGTACATATTTTTATAT
TCTCTTTATAAATGCATGTCTGACTGTACTTGTAACCATATTGTAACGCGTGGCCGTCCA
GCAGGCCTCGTGCTGCTGTGGCCCGTCGGAGTAGCAGCATATTAGCAGCCCCTCAGCATA
CTGGGAACTTCTTCCTAAACCAAGAATGTAAATTTGGTCAGGTCTGCTCTTCGTTCATTC
AATTATTTTAAACATTTGAATTAATTACTGTATATCCTGAAATACATTTATCCTTTTGGC
AGTGACTCGATTCCACGAATGTGTCTTAATATCCCTTCAGCTGGCGGTTACTCTTTTCCT
TTTCAATCCCTTGAAGTTGCCCTATAGGAGACAGAAATACTTTGCTGTCCGTATCCCTCG
GAGTCTGAAGGTAGTGGCATGGGTGGAGTGTGTGTTCTTTCTCCAACTCTATCATAATGA
TCATTAAACACGTCTGTAGCAAAGATGGTGGTAGTTGTTTTGTTCCCGAAGTCACCCTTC
ACCGTGGCGATTTGCAAAGGACATGTACCTGAACGTTGCTGTAAATCTTGAGATAAAACT
GTTTGGAGATTTAACCACCTCTCTGATGGGGGACCAACTCTATGGAAATTGTAAATAAGT
TTTATTTATAAACCTGGCACTGTATTCAATAAACATTTCTGCAGCCTTTCATCTCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
195-1438, gnl|bosTau2|chr10 (69304475-69303234) |
|
195-1438, gnl|canFam2|chr8 (64447631-64448648) |
|
195-1438, gnl|dasNov1|scaffold_43485 (6025-7052) |
|
195-1438, gnl|echTel1|scaffold_184842 (6084-7125) |
|
195-1438, gnl|hg17|chr14 (89942902-89943929) |
|
195-1438, gnl|Hg17|chr14 (89943120-89944365) |
|
195-1438, gnl|loxAfr1|scaffold_3280 (40686-39683) |
|
195-1438, gnl|mm7|chr12 (97703740-97704743) |
|
195-1438, gnl|Mm7|chr12 (97703944-97705169) |
|
195-1438, gnl|monDom2|scaffold_8 (35053549-35052417) |
|
195-1438, gnl|panTro1|chr15 (90210185-90211214) |
|
195-1438, gnl|rheMac2|chr7 (153618385-153619414) |
|
195-1438, gnl|rn3|chr6 (124490450-124491463) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
195-1438, gnl|bosTau2|chr10 (69304475-69303234) |
|
195-1438, gnl|canFam2|chr8 (64447631-64448648) |
|
195-1438, gnl|dasNov1|scaffold_43485 (6025-7052) |
|
195-1438, gnl|echTel1|scaffold_184842 (6084-7125) |
|
195-1438, gnl|hg17|chr14 (89942902-89943929) |
|
195-1438, gnl|Hg17|chr14 (89943120-89944365) |
|
195-1438, gnl|loxAfr1|scaffold_3280 (40686-39683) |
|
195-1438, gnl|mm7|chr12 (97703740-97704743) |
|
195-1438, gnl|Mm7|chr12 (97703944-97705169) |
|
195-1438, gnl|monDom2|scaffold_8 (35053549-35052417) |
|
195-1438, gnl|panTro1|chr15 (90210185-90211214) |
|
195-1438, gnl|rheMac2|chr7 (153618385-153619414) |
|
195-1438, gnl|rn3|chr6 (124490450-124491463) |
|
fcc (2.96677) |
|
cbr (2.04761) |
|
fco (2.0437) |
|
gul (1.42071) |
|
spc (1.24702) |
|
fhi (1.18704) |
|
sug (1.01833) |
|
hyp (0.999857) |
|
cbe (0.956938) |
|
ret (0.901133) |
|
fbs (0.876732) |
|
fce (0.814775) |
|
lyg (0.798616) |
|
bfe (0.749288) |
|
tra (0.738552) |
|
sin (0.69979) |
|
bla (0.621736) |
|
tbr (0.616713) |
|
sme (0.610874) |
|
nmm (0.531209) |
|
duo (0.518403) |
|
clu (0.478583) |
|
pgl (0.473934) |
|
ebs (0.473205) |
|
mgp (0.461361) |
|
ece (0.45861) |
|
fat (0.442282) |
|
ski (0.440205) |
|
nms (0.427716) |
|
cty (0.41632) |
|
ill (0.351185) |
|
rec (0.346141) |
|
cte (0.29274) |
|
med (0.232504) |
|
ecc (0.23007) |
|
aor (0.195274) |
|
col (0.195008) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fty (0.17584) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
csp (0.161186) |
|
mga (0.160205) |
|
isp (0.150376) |
|
liv (0.146284) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ste (0.135208) |
|
pla (0.133672) |
|
kid (0.129735) |
|
thg (0.126791) |
|
eep (0.122564) |
|
cly (0.120642) |
|
fcc (2.96677) |
|
cbr (2.04761) |
|
fco (2.0437) |
|
gul (1.42071) |
|
spc (1.24702) |
|
fhi (1.18704) |
|
sug (1.01833) |
|
hyp (0.999857) |
|
cbe (0.956938) |
|
ret (0.901133) |
|
fbs (0.876732) |
|
fce (0.814775) |
|
lyg (0.798616) |
|
bfe (0.749288) |
|
tra (0.738552) |
|
sin (0.69979) |
|
bla (0.621736) |
|
tbr (0.616713) |
|
sme (0.610874) |
|
nmm (0.531209) |
|
duo (0.518403) |
|
clu (0.478583) |
|
pgl (0.473934) |
|
ebs (0.473205) |
|
mgp (0.461361) |
|
ece (0.45861) |
|
fat (0.442282) |
|
ski (0.440205) |
|
nms (0.427716) |
|
cty (0.41632) |
|
ill (0.351185) |
|
rec (0.346141) |
|
cte (0.29274) |
|
med (0.232504) |
|
ecc (0.23007) |
|
aor (0.195274) |
|
col (0.195008) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fty (0.17584) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
csp (0.161186) |
|
mga (0.160205) |
|
isp (0.150376) |
|
liv (0.146284) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ste (0.135208) |
|
pla (0.133672) |
|
kid (0.129735) |
|
thg (0.126791) |
|
eep (0.122564) |
|
cly (0.120642) |
