Non-Coding RNA Search

Ss1.1-rret23_a10.5

Sequence:


               
               CAGTGAATATAAACTCTAGCTCCTTCATCTACTATAGAGGAATATCTTTAGGATATAGAA
ATAGGAAAGAAAAATTCTGGGAAAAAAATTGTACAATAGGGGAGATAATTCAGAAAGAAA
GGCTACTTGTTGGAATTTCTAGTCTAAATAGTACAGGGTACTCAGGAAGAAAGAGGGACG
TGGAAAGAAAACTAAATGTGTTACTAAAGGTGAGATATATGACCAAACAATGGTTAAGGC
ACTATAGGCCTAAAATGGAATAATTGAGTCCTATAATTCCGAATCTGGGTTAAGTATTTT
TCTGTATCCTTCCTGGCCACCTGTATATTCTGAAATAGGCACATTAGTCTTGGAAGCAAT
AGGAGTGTCCTGAGTAATTTTCTCTAAAGTAGAAAAATTATGCATCTAACTGTGGTTTTG
GTACTGGTGCCCTGTATATAGGTAGCAATATAGGACCTTCAGAGTAAACTTGCTTCTGGT
AGATCTCACTCATTGGATTAGCGTACAACTGTCTATATAATAGTTCTCATTTTTATTATT
AGATTGTGGAAAACTTTTGCATTATTTTCTTTTGTTAAGAAAATGGAAACTTGAAAATGG
TGATAAAAATTGAAATATATGTGATATTTGCATTATTAAAACCCTTGGCAGATCTCAAGT
CTCAGGGCTATACTATATACTGGTTAAAGCACTGAATAATGTCTGGTTTTCTTTCTACCT
GTGAAATGAGAATAATATTTATCTCATATGTTTGTCTTGAATAGAAAATGAGACAATGTA
TATAAAAGCACTTTGTTAACTATAAAGGTAGTACAAGTGTGAGCTTCTATTTGTTTAGAA
GCATAAATGTGGATTATGTACAATTTGAATTACACATAAATTTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGAATATAAACTCTAGCTCCTTCATCTACTATAGAGGAATATCTTTAGGATATAGAA
ATAGGAAAGAAAAATTCTGGGAAAAAAATTGTACAATAGGGGAGATAATTCAGAAAGAAA
GGCTACTTGTTGGAATTTCTAGTCTAAATAGTACAGGGTACTCAGGAAGAAAGAGGGACG
TGGAAAGAAAACTAAATGTGTTACTAAAGGTGAGATATATGACCAAACAATGGTTAAGGC
ACTATAGGCCTAAAATGGAATAATTGAGTCCTATAATTCCGAATCTGGGTTAAGTATTTT
TCTGTATCCTTCCTGGCCACCTGTATATTCTGAAATAGGCACATTAGTCTTGGAAGCAAT
AGGAGTGTCCTGAGTAATTTTCTCTAAAGTAGAAAAATTATGCATCTAACTGTGGTTTTG
GTACTGGTGCCCTGTATATAGGTAGCAATATAGGACCTTCAGAGTAAACTTGCTTCTGGT
AGATCTCACTCATTGGATTAGCGTACAACTGTCTATATAATAGTTCTCATTTTTATTATT
AGATTGTGGAAAACTTTTGCATTATTTTCTTTTGTTAAGAAAATGGAAACTTGAAAATGG
TGATAAAAATTGAAATATATGTGATATTTGCATTATTAAAACCCTTGGCAGATCTCAAGT
CTCAGGGCTATACTATATACTGGTTAAAGCACTGAATAATGTCTGGTTTTCTTTCTACCT
GTGAAATGAGAATAATATTTATCTCATATGTTTGTCTTGAATAGAAAATGAGACAATGTA
TATAAAAGCACTTTGTTAACTATAAAGGTAGTACAAGTGTGAGCTTCTATTTGTTTAGAA
GCATAAATGTGGATTATGTACAATTTGAATTACACATAAATTTGTTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-343, gnl|bosTau2|chr10 (2099999-2100330)
               

               
               1-343, gnl|Hg17|chr5 (76395920-76396219)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-343, gnl|bosTau2|chr10 (2099999-2100330)
               

               
               1-343, gnl|Hg17|chr5 (76395920-76396219)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               ret (0.3862)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	1-343, gnl\|bosTau2\|chr10 (2099999-2100330)
	1-343, gnl\|Hg17\|chr5 (76395920-76396219)

	ret (0.3862)
	thg (0.253582)
	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	fco (0.157208)
	isp (0.150376)
	spl (0.143184)
	lnt (0.142308)
	kid (0.129735)
	bla (0.124347)