Non-Coding RNA Search

Ss1.1-rret23_b12.5

Sequence:


               
               TCATATTCTTATTTTGGGGGGGGGCAAGGATTTGGTATGGGGGCAAAGAAATACCAAAAC
TAACAGAATGAAACCAACTTTATTCTCTTTTTTTCTTCTACTAGTAGATGAGACAAACTT
TAAAAGAGGGTTATGGAAAGAAGAGTGCTTTTTAAAATGTGTCTAGTTTCCCAGTGTCTT
TCCAAACTTAAGCTACAGCAGCATTTATTCAGAGAACATCTAAAAGTTTAGTAACCCCCA
CCCACTTCCCCCCTCAAATCTTTACAGCTTGATATTTTCAGTTTTAACCAACTAGGCTGA
AGATATTATTTCTTTCAACAAACTGGACTTTCCAAACAGTTTTTCTATATTTGAAGATGC
TGAACTTTTATATTTTTCCAATACAAAAAAAATTTATAATTTACATATGAACCTTCATTC
TGAAGTACATTCTATATCTGTCTCATTTTGCCTCTTATGCTGTCCAAAAGAGTAAAGTTT
CAGGACAGTTTTGAAACTAAAAATTAGAGTTAAAGTTCATATCACCTTTCATTCACTTTT
TCTATTTTTCTCTATAATTCAACCTTTCAAAACATAGTAACTGTATTTTTTTTAAACAGA
TGGCCTGATTGATGTTCCATAACCATAAGAAGTAGTTAGAAACTCATGGAAAGTCTTTCC
AGCAAAACTTGTAGCTTTTGTGTCTTGGTTACATATTCATGGGTTAAATACATCCTTGTA
AAGTGTCTTCCACTTAAAGAGAACTTTTGTATTGTAATTTATTTTTTATTGTGCCTTAAA
CATTCGTGTAAATAATCTTCAGTAATAAAGCATTATCAATTAAAAAAAAAAAAAAAAAAA
AAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATATTCTTATTTTGGGGGGGGGCAAGGATTTGGTATGGGGGCAAAGAAATACCAAAAC
TAACAGAATGAAACCAACTTTATTCTCTTTTTTTCTTCTACTAGTAGATGAGACAAACTT
TAAAAGAGGGTTATGGAAAGAAGAGTGCTTTTTAAAATGTGTCTAGTTTCCCAGTGTCTT
TCCAAACTTAAGCTACAGCAGCATTTATTCAGAGAACATCTAAAAGTTTAGTAACCCCCA
CCCACTTCCCCCCTCAAATCTTTACAGCTTGATATTTTCAGTTTTAACCAACTAGGCTGA
AGATATTATTTCTTTCAACAAACTGGACTTTCCAAACAGTTTTTCTATATTTGAAGATGC
TGAACTTTTATATTTTTCCAATACAAAAAAAATTTATAATTTACATATGAACCTTCATTC
TGAAGTACATTCTATATCTGTCTCATTTTGCCTCTTATGCTGTCCAAAAGAGTAAAGTTT
CAGGACAGTTTTGAAACTAAAAATTAGAGTTAAAGTTCATATCACCTTTCATTCACTTTT
TCTATTTTTCTCTATAATTCAACCTTTCAAAACATAGTAACTGTATTTTTTTTAAACAGA
TGGCCTGATTGATGTTCCATAACCATAAGAAGTAGTTAGAAACTCATGGAAAGTCTTTCC
AGCAAAACTTGTAGCTTTTGTGTCTTGGTTACATATTCATGGGTTAAATACATCCTTGTA
AAGTGTCTTCCACTTAAAGAGAACTTTTGTATTGTAATTTATTTTTTATTGTGCCTTAAA
CATTCGTGTAAATAATCTTCAGTAATAAAGCATTATCAATTAAAAAAAAAAAAAAAAAAA
AAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               627-837, gnl|bosTau2|chr23 (31894645-31894435)
               

               
               627-837, gnl|Hg17|chr11 (117629541-117629341)
               

               
               627-837, gnl|Mm7|chr9 (44988180-44988368)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               627-837, gnl|bosTau2|chr23 (31894645-31894435)
               

               
               627-837, gnl|Hg17|chr11 (117629541-117629341)
               

               
               627-837, gnl|Mm7|chr9 (44988180-44988368)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               jej (0.197844)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

	627-837, gnl\|bosTau2\|chr23 (31894645-31894435)
	627-837, gnl\|Hg17\|chr11 (117629541-117629341)
	627-837, gnl\|Mm7\|chr9 (44988180-44988368)

	jej (0.197844)
	ton (0.1755)
	sin (0.174948)
	nmm (0.132802)
	ret (0.128733)