Non-Coding RNA Search

Ss1.1-rret23_c16.5

Sequence:


               
               TTATCAGTGGGCCAGTACAACTGTCCAGGCCAATATGTGCCCTCAGTGCCATCCAACATG
CATGTTTCTTCATGCCCAGATGATTGGATAGGATACCAGACGAAATGCTATTTTATTTCC
AAGAAAACAAAGAACTGGACCTTGGCCCAAAGCTTCTGCTCCAAACACCACGGTGCTACC
CTTGCTCTCCTAGAGTCTAAAGAGGACATGGTCTTTTTAAAACAACATGTGGGGAGAGCT
GAACACTGGATTGGGCTGAAAAATGAAGATGGCCAGACTTGGAAATGGTCAAATGGCAAA
GAATTTAACAACTGGTTCAAACTTACAGGATCCAAGAACTGTCCATTTCTGAATAGCACC
GAGGTCGGCAGCATGGAATGTGAAAAGAATTTACACTGGATATGTAGTAAATCCTCCATA
TAAAGAGGACTCCTATCTGTTTATAGACGATTCTATCGTGGAACTCAAAGAAATGTGTGT
GGCAAGTGCTGCTCTGTGGTCAGAAGTTTTCCATAAAGACTTTGTGGAAAAAAACAAACA
AACAACTTTGTATTATTTTGGAAACTTTCTTCCAAATAAGACTGTGGAAAAAAGGGGGAA
AAATTCCAGGAATATCTACATTATGGAATCCTCCTGCCATGAGCTGAAAAAGTCACAGGT
TGACTGATAATTTTGTCCAAGAATGAGAAGAACGACTTCAAGCTTACGAATGCACTTTAT
ATTTTTTAAATTCAGAAATAATAAAATAACTAGGTTAAGAGTTATTATTTATTGTTGAAT
GACTACGAACAATGAGTGTCCCTCATGCAGCTGCACGATATGAAGGAGTTAAATGATGAT
GGTATGAAAAACTGAATGTAGACAAAGGATATTTTAACCAGGAACACAGATATTTAGTCT
AGATGCCTTTTCTTTAACTCAGAGAACATTTGTAAGGAGGCAAATGCTTACGAAACGAAG
CTTTGTAATATTTCTCTCTTTTTAAAGAAGTGTCTCAAGTTACTTTGTCACTTCCTCCCC
CAAAGAATGGGATGATCCTGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCAGTGGGCCAGTACAACTGTCCAGGCCAATATGTGCCCTCAGTGCCATCCAACATG
CATGTTTCTTCATGCCCAGATGATTGGATAGGATACCAGACGAAATGCTATTTTATTTCC
AAGAAAACAAAGAACTGGACCTTGGCCCAAAGCTTCTGCTCCAAACACCACGGTGCTACC
CTTGCTCTCCTAGAGTCTAAAGAGGACATGGTCTTTTTAAAACAACATGTGGGGAGAGCT
GAACACTGGATTGGGCTGAAAAATGAAGATGGCCAGACTTGGAAATGGTCAAATGGCAAA
GAATTTAACAACTGGTTCAAACTTACAGGATCCAAGAACTGTCCATTTCTGAATAGCACC
GAGGTCGGCAGCATGGAATGTGAAAAGAATTTACACTGGATATGTAGTAAATCCTCCATA
TAAAGAGGACTCCTATCTGTTTATAGACGATTCTATCGTGGAACTCAAAGAAATGTGTGT
GGCAAGTGCTGCTCTGTGGTCAGAAGTTTTCCATAAAGACTTTGTGGAAAAAAACAAACA
AACAACTTTGTATTATTTTGGAAACTTTCTTCCAAATAAGACTGTGGAAAAAAGGGGGAA
AAATTCCAGGAATATCTACATTATGGAATCCTCCTGCCATGAGCTGAAAAAGTCACAGGT
TGACTGATAATTTTGTCCAAGAATGAGAAGAACGACTTCAAGCTTACGAATGCACTTTAT
ATTTTTTAAATTCAGAAATAATAAAATAACTAGGTTAAGAGTTATTATTTATTGTTGAAT
GACTACGAACAATGAGTGTCCCTCATGCAGCTGCACGATATGAAGGAGTTAAATGATGAT
GGTATGAAAAACTGAATGTAGACAAAGGATATTTTAACCAGGAACACAGATATTTAGTCT
AGATGCCTTTTCTTTAACTCAGAGAACATTTGTAAGGAGGCAAATGCTTACGAAACGAAG
CTTTGTAATATTTCTCTCTTTTTAAAGAAGTGTCTCAAGTTACTTTGTCACTTCCTCCCC
CAAAGAATGGGATGATCCTGTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47522992|ref|NP_999256.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522992|ref|NP_999256.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               504-623, + strand, RNAz p=0.982237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               504-623, + strand, RNAz p=0.982237

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001781, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001781, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               5-212, gnl|bosTau2|chr5 (59238403-59238607)
               

               
               5-212, gnl|canFam2|chr27 (39223921-39223665)
               

               
               5-212, gnl|dasNov1|scaffold_7629 (8238-7976)
               

               
               5-212, gnl|echTel1|scaffold_311333 (40172-40425)
               

               
               5-212, gnl|hg17|chr12 (9798918-9799169)
               

               
               5-212, gnl|Hg17|chr12 (9799127-9798923)
               

               
               5-212, gnl|loxAfr1|scaffold_7082 (52625-52882)
               

               
               5-212, gnl|mm7|chr6 (129293294-129293545)
               

               
               5-212, gnl|Mm7|chr6 (129293503-129293299)
               

               
               5-212, gnl|monDom2|scaffold_31 (20864637-20864358)
               

               
               5-212, gnl|oryCun1|scaffold_214231 (11171-10920)
               

               
               5-212, gnl|panTro1|chrUn_random (36052627-36052878)
               

               
               5-212, gnl|rheMac2|chr11 (9971956-9972207)
               

               
               5-212, gnl|rn3|chr4 (166775283-166775534)
               


               
               311-1006, gnl|bosTau2|chr5 (59240332-59241016)
               

               
               311-1006, gnl|Hg17|chr12 (9797456-9796783)
               

               
               311-1006, gnl|Mm7|chr6 (129291685-129291064)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-212, gnl|bosTau2|chr5 (59238403-59238607)
               

               
               5-212, gnl|canFam2|chr27 (39223921-39223665)
               

               
               5-212, gnl|dasNov1|scaffold_7629 (8238-7976)
               

               
               5-212, gnl|echTel1|scaffold_311333 (40172-40425)
               

               
               5-212, gnl|hg17|chr12 (9798918-9799169)
               

               
               5-212, gnl|Hg17|chr12 (9799127-9798923)
               

               
               5-212, gnl|loxAfr1|scaffold_7082 (52625-52882)
               

               
               5-212, gnl|mm7|chr6 (129293294-129293545)
               

               
               5-212, gnl|Mm7|chr6 (129293503-129293299)
               

               
               5-212, gnl|monDom2|scaffold_31 (20864637-20864358)
               

               
               5-212, gnl|oryCun1|scaffold_214231 (11171-10920)
               

               
               5-212, gnl|panTro1|chrUn_random (36052627-36052878)
               

               
               5-212, gnl|rheMac2|chr11 (9971956-9972207)
               

               
               5-212, gnl|rn3|chr4 (166775283-166775534)
               


               
               311-1006, gnl|bosTau2|chr5 (59240332-59241016)
               

               
               311-1006, gnl|Hg17|chr12 (9797456-9796783)
               

               
               311-1006, gnl|Mm7|chr6 (129291685-129291064)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tra (0.246184)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

	5-212, gnl\|bosTau2\|chr5 (59238403-59238607)
	5-212, gnl\|canFam2\|chr27 (39223921-39223665)
	5-212, gnl\|dasNov1\|scaffold_7629 (8238-7976)
	5-212, gnl\|echTel1\|scaffold_311333 (40172-40425)
	5-212, gnl\|hg17\|chr12 (9798918-9799169)
	5-212, gnl\|Hg17\|chr12 (9799127-9798923)
	5-212, gnl\|loxAfr1\|scaffold_7082 (52625-52882)
	5-212, gnl\|mm7\|chr6 (129293294-129293545)
	5-212, gnl\|Mm7\|chr6 (129293503-129293299)
	5-212, gnl\|monDom2\|scaffold_31 (20864637-20864358)
	5-212, gnl\|oryCun1\|scaffold_214231 (11171-10920)
	5-212, gnl\|panTro1\|chrUn_random (36052627-36052878)
	5-212, gnl\|rheMac2\|chr11 (9971956-9972207)
	5-212, gnl\|rn3\|chr4 (166775283-166775534)

	311-1006, gnl\|bosTau2\|chr5 (59240332-59241016)
	311-1006, gnl\|Hg17\|chr12 (9797456-9796783)
	311-1006, gnl\|Mm7\|chr6 (129291685-129291064)

	tra (0.246184)
	sin (0.174948)
	nco (0.161734)
	eli (0.151814)
	lnt (0.142308)
	ret (0.128733)
	cbl (0.114797)