Non-Coding RNA Search

Ss1.1-rret23_e24.5

Sequence:


               
               TAAGGATACATTCAAGCTTGGTTACAAAAATAAAACATGCATCATTTTTCATTGCCAACC
AAGCACAAAGTTATTTTATACTGACTGTATATTTTAAAGTATACTCTCAGATATGGCCTC
TTACAGTATTTAAGATATAGCAAGGACATGGCTGATTTTTTTTTTTTTTATAAAAAATTG
GCACTAATAAGTGGGTTTATTGGTCTTTTCTAATTGTATAATTTAATTTAGTACAAAGTT
TGTAAAATATCAGAGGATATATATATATTGTTTCTACGACATGGTATTGCATTTATATCT
TTTTACTACAGTGATCTGTGACAGCAGCAGCTTCATGTTGTATTTTTTTTACTGAAATTG
TAAAATATCCATCTTAAAGACATCAACTATTCTAAAAATTGTGTACAGGATATTCCTTTA
GTGGTGGAATTAAAATGTACGAATATTTGCTTTTTCAAAAAAAAATGTTTTTCTGTTAAA
AAGTTTAAAGATTTTTGCTATATATTATGGAAGAAAATGTAATCGTAAATATTAATTTTG
TACCTATATTGTGCAATACTTGAAAAAACGGTATAAAAGTATTTTGAGTCAGTGTCTTAC
ATGTAAAGAGGGACTGAAATAGTTTATATTAAGTTTGTATTAAAATTCTTTAAAATTAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGATACATTCAAGCTTGGTTACAAAAATAAAACATGCATCATTTTTCATTGCCAACC
AAGCACAAAGTTATTTTATACTGACTGTATATTTTAAAGTATACTCTCAGATATGGCCTC
TTACAGTATTTAAGATATAGCAAGGACATGGCTGATTTTTTTTTTTTTTATAAAAAATTG
GCACTAATAAGTGGGTTTATTGGTCTTTTCTAATTGTATAATTTAATTTAGTACAAAGTT
TGTAAAATATCAGAGGATATATATATATTGTTTCTACGACATGGTATTGCATTTATATCT
TTTTACTACAGTGATCTGTGACAGCAGCAGCTTCATGTTGTATTTTTTTTACTGAAATTG
TAAAATATCCATCTTAAAGACATCAACTATTCTAAAAATTGTGTACAGGATATTCCTTTA
GTGGTGGAATTAAAATGTACGAATATTTGCTTTTTCAAAAAAAAATGTTTTTCTGTTAAA
AAGTTTAAAGATTTTTGCTATATATTATGGAAGAAAATGTAATCGTAAATATTAATTTTG
TACCTATATTGTGCAATACTTGAAAAAACGGTATAAAAGTATTTTGAGTCAGTGTCTTAC
ATGTAAAGAGGGACTGAAATAGTTTATATTAAGTTTGTATTAAAATTCTTTAAAATTAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-112, + strand, RNAz p=0.976368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-112, + strand, RNAz p=0.976368

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005749, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005749, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-662, gnl|bosTau2|chr19 (28115591-28114940)
               

               
               1-662, gnl|Hg17|chr17 (46295245-46294583)
               

               
               1-662, gnl|Mm7|chr11 (94323884-94324534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-662, gnl|bosTau2|chr19 (28115591-28114940)
               

               
               1-662, gnl|Hg17|chr17 (46295245-46294583)
               

               
               1-662, gnl|Mm7|chr11 (94323884-94324534)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bfe (1.19886)
               

               
               fco (0.471624)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.19886)
               

               
               fco (0.471624)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)

	1-662, gnl\|bosTau2\|chr19 (28115591-28114940)
	1-662, gnl\|Hg17\|chr17 (46295245-46294583)
	1-662, gnl\|Mm7\|chr11 (94323884-94324534)

	bfe (1.19886)
	fco (0.471624)
	ldo (0.291008)
	fce (0.271592)
	fcc (0.197785)
	nco (0.161734)
	isp (0.150376)
	ret (0.128733)
	thg (0.126791)
	jej (0.0989218)