Non-Coding RNA Search

Ss1.1-rret23_g12.5

Sequence:


               
               GGAGCTGCCATTTTGGGGAAACGGAGGGTAGGGACCCTTTAACCCGGTTCACTAACCTAT
GTTTCAGAGTTGGGATTATCTGTAAGTTTGGAAAGAAAGCTTACTGTACGTTGATGTACT
GGTGAAGGGCTATGGTTTTAGTTCCTGGTGTTTTACAGAAGAATCTGCTCCTTAGGAGTT
CTAGGAAAGCTTTGACAATCCCCAAGGGGCATTTATGTTACTCCTTCACTCCTTCTCAAA
AGGAAGAATTACTTTTTTCTCATATTGCTCCTATATGCATTTCCTTCCTAACATTCAGAA
TTGGGAATTTTACCTTATAATAATTATTCCAGTAAGTGAGTTTATGAAGTTGATGATTTG
GAGAATAAAACAAATATCTTTGCAATTTGGGGTTTACTTTTATGTGGATATTTGGTATGT
GCATTACTCAATTCTGTTAAAACCTCATGCCTTTCATTGATTTAATTTGCGCTCTCAACT
TCATGTTACAGAATGATTCTTTAAAGACGCTTTAATGAAAAATATTATGAAAATATATAG
ATTTGTATGTCAATTTATACTTCAGAAATCCATATCTTTGTCATATTTATTTTTTTAGAA
AACTTCTAACTGCATGACTAAATGGTATTTAAAATGAACCCTCAAAAATATCTGGTACCT
TTGTCCAAAGTTTTATCTGTTGGAAGCTGTCAGCCATCCATGTTAAAGTTTCATAAAATA
GTTGATAATTGTATGCATTTTATATTCCTATGGTGTCTGTGTGAACTATATTTCTAAATA
TTCAGTATTAAATTGATTCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGCCATTTTGGGGAAACGGAGGGTAGGGACCCTTTAACCCGGTTCACTAACCTAT
GTTTCAGAGTTGGGATTATCTGTAAGTTTGGAAAGAAAGCTTACTGTACGTTGATGTACT
GGTGAAGGGCTATGGTTTTAGTTCCTGGTGTTTTACAGAAGAATCTGCTCCTTAGGAGTT
CTAGGAAAGCTTTGACAATCCCCAAGGGGCATTTATGTTACTCCTTCACTCCTTCTCAAA
AGGAAGAATTACTTTTTTCTCATATTGCTCCTATATGCATTTCCTTCCTAACATTCAGAA
TTGGGAATTTTACCTTATAATAATTATTCCAGTAAGTGAGTTTATGAAGTTGATGATTTG
GAGAATAAAACAAATATCTTTGCAATTTGGGGTTTACTTTTATGTGGATATTTGGTATGT
GCATTACTCAATTCTGTTAAAACCTCATGCCTTTCATTGATTTAATTTGCGCTCTCAACT
TCATGTTACAGAATGATTCTTTAAAGACGCTTTAATGAAAAATATTATGAAAATATATAG
ATTTGTATGTCAATTTATACTTCAGAAATCCATATCTTTGTCATATTTATTTTTTTAGAA
AACTTCTAACTGCATGACTAAATGGTATTTAAAATGAACCCTCAAAAATATCTGGTACCT
TTGTCCAAAGTTTTATCTGTTGGAAGCTGTCAGCCATCCATGTTAAAGTTTCATAAAATA
GTTGATAATTGTATGCATTTTATATTCCTATGGTGTCTGTGTGAACTATATTTCTAAATA
TTCAGTATTAAATTGATTCTTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-276, gnl|bosTau2|chr10 (47440174-47440465)
               

               
               1-276, gnl|Hg17|chr12 (87094466-87094729)
               

               
               1-276, gnl|Mm7|chr10 (99931474-99931209)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr10 (47440174-47440465)
               

               
               1-276, gnl|Hg17|chr12 (87094466-87094729)
               

               
               1-276, gnl|Mm7|chr10 (99931474-99931209)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ret (0.3862)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	1-276, gnl\|bosTau2\|chr10 (47440174-47440465)
	1-276, gnl\|Hg17\|chr12 (87094466-87094729)
	1-276, gnl\|Mm7\|chr10 (99931474-99931209)

	ret (0.3862)
	lin (0.145603)
	lyg (0.133103)
	tra (0.123092)
	med (0.116252)