Non-Coding RNA Search

Ss1.1-rret23_o14.5.5

Sequence:


               
               AAATGTGTGTACACACACTGTATATTTACACACTTTGTATTTAAAAACATCAAGGGACAG
TGATAGTGAAATAAATTCCTGGCCACTTAGACTTTCCAATCTAGGACTATGGCAGTAGAA
ATGATCTTTTGTGCTTTAAAACAGAAAGAGCTGATTCATTTGAAAACAAGCATTCAGCAG
GGTAAAAGTACATTGACATGCGGGCTGAATCCCTTGCACATAGGATCAAATATGAGCTCA
AATAAGTCTTTCTATTCAGTTCCCTCCGTACCACTGGTGACTTGTCAGATTTAGCATATA
GAATAATCTTCACATACTTTACCCACAATTATTGAAGTGTTTTCAGTACTTGTGTTACTT
AAGAACTGAATTTTGGTCTGAGTTCTATTTTAAAATTTTTCTCCTTCAGAGACATAGGTA
GACAACATGAAAGGCAAGTCAGTAAGAAAAAAACAAAAAATGTTTTATATACATAGGCTC
CTAGCCAGAGTTTTCTATGTAAAGCATTTAGAGTATATTCTGTTTTTAAAATAAGAATAA
TTTCAAGGCAGATATTATAGTATTTATGTAGTTTGCAAAAGAAGTTTACAATTTTTTTGC
TATTGTAATGTAACATTTATGTGCAAAACTACTTGTAATAAAAGGATTTGAGAAGTCATG
CTTTTAGATATAATGGCCTAAAATAGAGAGTATTATGATTTGAAGTCGTAAATATCATAA
ACTGTGTATTAAGTGGGTCTGTCAGAAGCTTATATCAAAGCTACCTATAAAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTGTGTACACACACTGTATATTTACACACTTTGTATTTAAAAACATCAAGGGACAG
TGATAGTGAAATAAATTCCTGGCCACTTAGACTTTCCAATCTAGGACTATGGCAGTAGAA
ATGATCTTTTGTGCTTTAAAACAGAAAGAGCTGATTCATTTGAAAACAAGCATTCAGCAG
GGTAAAAGTACATTGACATGCGGGCTGAATCCCTTGCACATAGGATCAAATATGAGCTCA
AATAAGTCTTTCTATTCAGTTCCCTCCGTACCACTGGTGACTTGTCAGATTTAGCATATA
GAATAATCTTCACATACTTTACCCACAATTATTGAAGTGTTTTCAGTACTTGTGTTACTT
AAGAACTGAATTTTGGTCTGAGTTCTATTTTAAAATTTTTCTCCTTCAGAGACATAGGTA
GACAACATGAAAGGCAAGTCAGTAAGAAAAAAACAAAAAATGTTTTATATACATAGGCTC
CTAGCCAGAGTTTTCTATGTAAAGCATTTAGAGTATATTCTGTTTTTAAAATAAGAATAA
TTTCAAGGCAGATATTATAGTATTTATGTAGTTTGCAAAAGAAGTTTACAATTTTTTTGC
TATTGTAATGTAACATTTATGTGCAAAACTACTTGTAATAAAAGGATTTGAGAAGTCATG
CTTTTAGATATAATGGCCTAAAATAGAGAGTATTATGATTTGAAGTCGTAAATATCATAA
ACTGTGTATTAAGTGGGTCTGTCAGAAGCTTATATCAAAGCTACCTATAAAAATAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               245-778, gnl|bosTau2|chr3 (44762109-44762629)
               

               
               245-778, gnl|Hg17|chr1 (84989857-84989321)
               

               
               245-778, gnl|Mm7|chr3 (146184140-146184643)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               245-778, gnl|bosTau2|chr3 (44762109-44762629)
               

               
               245-778, gnl|Hg17|chr1 (84989857-84989321)
               

               
               245-778, gnl|Mm7|chr3 (146184140-146184643)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	245-778, gnl\|bosTau2\|chr3 (44762109-44762629)
	245-778, gnl\|Hg17\|chr1 (84989857-84989321)
	245-778, gnl\|Mm7\|chr3 (146184140-146184643)