Non-Coding RNA Search

Ss1.1-rret24_b12.5

Sequence:


               
               GTTTCTGCTGCACCACAACAGGAACTCCTTTCTCTTTCTCTTCCCTTTCCTCTTCCTCTT
CCTCTCTCTCTCTCTCTTTTCTTTTCTTTCTTTTCTTTCTTTCATGGGGGGAGGCATCCT
TTGAAACCAGATTGAGACTGGTGTCTGGGCAGAATGTTGCTCTCACAGTGCTGAACTTGC
ATACTGCAAGAAGTAACGAGGCTGCTTCTAAGTACAGATGAACCTTGTCTTTGTAATGTC
CTAAAGGAGAACCATAGTTTACATGCAATCTTGTAGTCTTTTTGCTATGAAGAATGTTTA
TTTGCCTTTTTCAATGTATTTGCTTGATTTAGCCAGTCTGAACAAGGAAAGGAAAAATTA
AAAACCTCTGAACTCTGATCTTTTGCTGCTTTTGTATGTTCTGATTGTGAAGCTGATGGT
AAGGATGTTCAAAAGCACATGGTAAATTTATACGCCTTCAGAATACTGTGCCTGTTCTTT
TATGAGCTTTTAAAATACTTTGTTAAAATATGATTCAATTTTTGTAATTGTATAGATTCT
TAGCTAATTTTCAGTGCTGCGATGGCATATCTAAATTTTTATATCCAAAAATATATTCTT
GTGTGCTGCTTTTCCTACCTGGAGATGCTATTTCATACAATGAAGATTGTTTTTCTTTTT
ACTAACTCATTTCAAGGAGAAAGAAGTTTACTGTTAAGCAAGCTGTTTTTTTCCCCAGAT
ACCACAAAACAAGTTTTTTTTTCTTTTTTTCTCCAATAAATGATAGCATTATGATCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTGCTGCACCACAACAGGAACTCCTTTCTCTTTCTCTTCCCTTTCCTCTTCCTCTT
CCTCTCTCTCTCTCTCTTTTCTTTTCTTTCTTTTCTTTCTTTCATGGGGGGAGGCATCCT
TTGAAACCAGATTGAGACTGGTGTCTGGGCAGAATGTTGCTCTCACAGTGCTGAACTTGC
ATACTGCAAGAAGTAACGAGGCTGCTTCTAAGTACAGATGAACCTTGTCTTTGTAATGTC
CTAAAGGAGAACCATAGTTTACATGCAATCTTGTAGTCTTTTTGCTATGAAGAATGTTTA
TTTGCCTTTTTCAATGTATTTGCTTGATTTAGCCAGTCTGAACAAGGAAAGGAAAAATTA
AAAACCTCTGAACTCTGATCTTTTGCTGCTTTTGTATGTTCTGATTGTGAAGCTGATGGT
AAGGATGTTCAAAAGCACATGGTAAATTTATACGCCTTCAGAATACTGTGCCTGTTCTTT
TATGAGCTTTTAAAATACTTTGTTAAAATATGATTCAATTTTTGTAATTGTATAGATTCT
TAGCTAATTTTCAGTGCTGCGATGGCATATCTAAATTTTTATATCCAAAAATATATTCTT
GTGTGCTGCTTTTCCTACCTGGAGATGCTATTTCATACAATGAAGATTGTTTTTCTTTTT
ACTAACTCATTTCAAGGAGAAAGAAGTTTACTGTTAAGCAAGCTGTTTTTTTCCCCAGAT
ACCACAAAACAAGTTTTTTTTTCTTTTTTTCTCCAATAAATGATAGCATTATGATCTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               109-780, gnl|bosTau2|chr10 (17129098-17129761)
               

               
               109-780, gnl|Hg17|chr1 (164953254-164953916)
               

               
               109-780, gnl|Mm7|chr1 (165146108-165145420)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-780, gnl|bosTau2|chr10 (17129098-17129761)
               

               
               109-780, gnl|Hg17|chr1 (164953254-164953916)
               

               
               109-780, gnl|Mm7|chr1 (165146108-165145420)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               lyg (0.532411)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.532411)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

	109-780, gnl\|bosTau2\|chr10 (17129098-17129761)
	109-780, gnl\|Hg17\|chr1 (164953254-164953916)
	109-780, gnl\|Mm7\|chr1 (165146108-165145420)

	lyg (0.532411)
	ret (0.514933)
	lin (0.436808)
	mgp (0.230681)
	jej (0.197844)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	nco (0.161734)
	mga (0.160205)
	ski (0.146735)
	liv (0.146284)
	pty (0.142714)
	kid (0.129735)
	ldo (0.0970026)