Non-Coding RNA Search

Ss1.1-rret24_b24.5

Sequence:


               
               TAAGGCAAACTCTCATCCCTGGGCTTGCCCTACATTGCAAGATCAGACTGGGCTTAAAAA
ATCCTCACCCATATTTGGAACTAGAATGGCAAGTAGTAGATTTTTCCTCTTTTAAAATTC
CTTTTTCAGGGACATAACTGGGGAGAGAAAGTTGAAAATTGAAAAACAGGTACATTTTAA
ACTGTTCAGATATGAGGCTTAAACCCTCTCCCAGCCCACATGTCACCTCTGTGGCAAAAG
CTCTCTGGATCCCTAGAAGTTAATAGATTGGACAAAAGTCTAGAAACTGATTTTCTTTTT
TATTTTTCCCTCCCTCCCCCAAGAAAATGATTTTAAATAAGTACAGGGCATACTTAAAAA
GAGTCTATAGTTTTGTATGTTATGGTAGCAGATAAGTAAATTTGAGGGTTCTTTTTTCAA
TGATATCAATATTTGAATAATAACTAAGATTATCAGTGTATTTGGACTTTTTTCTAAAGT
TCTGGAATGATTAGTAGGGATTTATTCTTCCTTTTGCACCTTCCTGCAGATGTTTTTTCC
AAGACCATTGTTAGAAGTCTGTTCATCTTCTGATAGAAATGTCCAGATAACATACTTCCT
TCACTGCCGGTTATGTCTGCCAGGGGCCTCCTTAGACTAGATTCTTCCTCACTCCAAAGT
TGGGACTCATGTCCTGCCAGTAGCGAATCTGCAGAAGTAATTTGAATGAGTTAAAACCAA
ATCTTGATAGCAGGAGACAGAGCTTCCTGATCTAGATGTACCACTAGAGTTTAGATTGGA
AGTTCCTTTAAAGGGGGTTTTTTGGGATGTCTTCAGTCTCTGTGTAAATATCCACATGCT
TGTGCATTGTAAACCAAGTGTGTATTCCTACGTATGAATTTGTAGAACTGATCTCTCTGC
TTCAAGAGAAGCTGCACCTTTAATTTTATAAGATCCCCTCCACCTGTTACCCTATAAATA
TTTGTAAATAGAACACTAAAATTTGTAGTGATAGGATCAATTTGGGAATATCTGCTGAGA
GACCAAAAAGTTCATTTTTTTAAGTACCTTGGTTAAAGAGTAAAGATTATTCCTCTTATT
TTTTAAAAGAAGAATGCACTTTAACAAACACAGAGCTGCATGGGCAATTCAAATAAATCT
GTGAAGTGCAGTACCCATTCAGAAATCATACTTCCTGGAAACCGTTCAAAAGCAGAGTCT
AGACGGGCTGTTGATCTCACTGCCTGGCCGTTGAAGCTCAGATTCCGGTCAATTTTGAGA
CGAGCAGGGCTGCTTCAAAAGAGCAACGTGAATACAGCCAGAAGCTTCAGACAGGTCTGT
CAATGGCGGGTCCCGTACTTACCACTAACTAGCAAAACTGACAAGAAAAAAACTCATAGA
GAAAAAAATCCTACTGCTGGTGTGCACTCCTTACCATAACAGACTTTTGCAAATGGAGTT
TTACAGTCTATATTTAAAAAATTGTATGTTTGTAACAAATAAAGTATGCGGAAAAGTGAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGCAAACTCTCATCCCTGGGCTTGCCCTACATTGCAAGATCAGACTGGGCTTAAAAA
ATCCTCACCCATATTTGGAACTAGAATGGCAAGTAGTAGATTTTTCCTCTTTTAAAATTC
CTTTTTCAGGGACATAACTGGGGAGAGAAAGTTGAAAATTGAAAAACAGGTACATTTTAA
ACTGTTCAGATATGAGGCTTAAACCCTCTCCCAGCCCACATGTCACCTCTGTGGCAAAAG
CTCTCTGGATCCCTAGAAGTTAATAGATTGGACAAAAGTCTAGAAACTGATTTTCTTTTT
TATTTTTCCCTCCCTCCCCCAAGAAAATGATTTTAAATAAGTACAGGGCATACTTAAAAA
GAGTCTATAGTTTTGTATGTTATGGTAGCAGATAAGTAAATTTGAGGGTTCTTTTTTCAA
TGATATCAATATTTGAATAATAACTAAGATTATCAGTGTATTTGGACTTTTTTCTAAAGT
TCTGGAATGATTAGTAGGGATTTATTCTTCCTTTTGCACCTTCCTGCAGATGTTTTTTCC
AAGACCATTGTTAGAAGTCTGTTCATCTTCTGATAGAAATGTCCAGATAACATACTTCCT
TCACTGCCGGTTATGTCTGCCAGGGGCCTCCTTAGACTAGATTCTTCCTCACTCCAAAGT
TGGGACTCATGTCCTGCCAGTAGCGAATCTGCAGAAGTAATTTGAATGAGTTAAAACCAA
ATCTTGATAGCAGGAGACAGAGCTTCCTGATCTAGATGTACCACTAGAGTTTAGATTGGA
AGTTCCTTTAAAGGGGGTTTTTTGGGATGTCTTCAGTCTCTGTGTAAATATCCACATGCT
TGTGCATTGTAAACCAAGTGTGTATTCCTACGTATGAATTTGTAGAACTGATCTCTCTGC
TTCAAGAGAAGCTGCACCTTTAATTTTATAAGATCCCCTCCACCTGTTACCCTATAAATA
TTTGTAAATAGAACACTAAAATTTGTAGTGATAGGATCAATTTGGGAATATCTGCTGAGA
GACCAAAAAGTTCATTTTTTTAAGTACCTTGGTTAAAGAGTAAAGATTATTCCTCTTATT
TTTTAAAAGAAGAATGCACTTTAACAAACACAGAGCTGCATGGGCAATTCAAATAAATCT
GTGAAGTGCAGTACCCATTCAGAAATCATACTTCCTGGAAACCGTTCAAAAGCAGAGTCT
AGACGGGCTGTTGATCTCACTGCCTGGCCGTTGAAGCTCAGATTCCGGTCAATTTTGAGA
CGAGCAGGGCTGCTTCAAAAGAGCAACGTGAATACAGCCAGAAGCTTCAGACAGGTCTGT
CAATGGCGGGTCCCGTACTTACCACTAACTAGCAAAACTGACAAGAAAAAAACTCATAGA
GAAAAAAATCCTACTGCTGGTGTGCACTCCTTACCATAACAGACTTTTGCAAATGGAGTT
TTACAGTCTATATTTAAAAAATTGTATGTTTGTAACAAATAAAGTATGCGGAAAAGTGAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               7-294, gnl|bosTau2|chr4 (43130103-43129784)
               

               
               7-294, gnl|Hg17|chr7 (44690957-44690481)
               

               
               7-294, gnl|Mm7|chr11 (6421032-6420741)
               


               
               1334-1507, gnl|bosTau2|chr24 (10704614-10704441)
               

               
               1334-1507, gnl|Hg17|chr7 (44689308-44689132)
               

               
               1334-1507, gnl|Mm7|chr11 (6419777-6419607)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-294, gnl|bosTau2|chr4 (43130103-43129784)
               

               
               7-294, gnl|Hg17|chr7 (44690957-44690481)
               

               
               7-294, gnl|Mm7|chr11 (6421032-6420741)
               


               
               1334-1507, gnl|bosTau2|chr24 (10704614-10704441)
               

               
               1334-1507, gnl|Hg17|chr7 (44689308-44689132)
               

               
               1334-1507, gnl|Mm7|chr11 (6419777-6419607)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               thg (0.507164)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	7-294, gnl\|bosTau2\|chr4 (43130103-43129784)
	7-294, gnl\|Hg17\|chr7 (44690957-44690481)
	7-294, gnl\|Mm7\|chr11 (6421032-6420741)

	1334-1507, gnl\|bosTau2\|chr24 (10704614-10704441)
	1334-1507, gnl\|Hg17\|chr7 (44689308-44689132)
	1334-1507, gnl\|Mm7\|chr11 (6419777-6419607)

	thg (0.507164)
	aor (0.390549)
	sag (0.36543)
	sto (0.359648)
	mga (0.32041)
	isp (0.300752)
	nca (0.273748)
	fce (0.271592)
	cbe (0.239234)
	nms (0.213858)
	cmu (0.186393)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)