Non-Coding RNA Search

Ss1.1-rret24_c13.5

Sequence:


               
               TTCCCTGCCTTCTGACGTGGAGGATACCGAACCTGTGACGATGATTTTCATGGGGTATCA
GCGGGCAGACGATAGTGAGGAAGAAAAGAAGCTTCTAACAGGGTATGACGGGATCATCCG
TGCTGAGCTGGTTGTGATTGACGACGAGGAGGAGGAGGGTGAAGGAGAAGCTGAGAAACC
ATCGTACCATCCCATAGCTCCCCACAGCCAGGTTTTCCAGCCTGCCAAACCGACGCCGCT
TCCGAGAAAGAGAGCAGAGGTTAACCCCCATGAAAACACAAACCACAAGTCTCCCCACAA
AAATTCCATATCCCTGAAAGAACAAGAAGAAAGCTTAGGCAGCCCCATCCACCAGTCTCC
GCTTGACATTCAGATTGCAGGAGATGGGACTGAGGATCCGTCCTTAACAGCTTTAAGGAT
GAGAATGGCAAAGCTGGGGAAAAAAGTTATTTGAGAGGTGTACCATCTACGTAAACATTC
TTTGAAGAAGAAGCTAAGAAATGTCTGCAAATTTCTCTTCTGGATATTTTGTTTCTTATT
CCCGGGATTCAAAAAATATAATTATACCCATATTAAGCCATGTGAATAAGCAGTAGTCAT
TGTTTGTAAAAAGAAAATTTTTAAAATCTAGGGAGAACATTTAACTTTTCCAGTTACTTG
ACATGATTCAGTGAGGGGGAGACCAACGTATTTTTATCGTATTGATACCAAAGCATTTCT
AATAAGAGCTTGTTAAACGTAAAAATAAAGTTATTTAAAATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCTGCCTTCTGACGTGGAGGATACCGAACCTGTGACGATGATTTTCATGGGGTATCA
GCGGGCAGACGATAGTGAGGAAGAAAAGAAGCTTCTAACAGGGTATGACGGGATCATCCG
TGCTGAGCTGGTTGTGATTGACGACGAGGAGGAGGAGGGTGAAGGAGAAGCTGAGAAACC
ATCGTACCATCCCATAGCTCCCCACAGCCAGGTTTTCCAGCCTGCCAAACCGACGCCGCT
TCCGAGAAAGAGAGCAGAGGTTAACCCCCATGAAAACACAAACCACAAGTCTCCCCACAA
AAATTCCATATCCCTGAAAGAACAAGAAGAAAGCTTAGGCAGCCCCATCCACCAGTCTCC
GCTTGACATTCAGATTGCAGGAGATGGGACTGAGGATCCGTCCTTAACAGCTTTAAGGAT
GAGAATGGCAAAGCTGGGGAAAAAAGTTATTTGAGAGGTGTACCATCTACGTAAACATTC
TTTGAAGAAGAAGCTAAGAAATGTCTGCAAATTTCTCTTCTGGATATTTTGTTTCTTATT
CCCGGGATTCAAAAAATATAATTATACCCATATTAAGCCATGTGAATAAGCAGTAGTCAT
TGTTTGTAAAAAGAAAATTTTTAAAATCTAGGGAGAACATTTAACTTTTCCAGTTACTTG
ACATGATTCAGTGAGGGGGAGACCAACGTATTTTTATCGTATTGATACCAAAGCATTTCT
AATAAGAGCTTGTTAAACGTAAAAATAAAGTTATTTAAAATAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|9716108|emb|CAC01529.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9716108|emb|CAC01529.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-410, gnl|bosTau2|chr3 (35329091-35329497)
               

               
               1-410, gnl|Hg17|chr1 (99867040-99867449)
               

               
               1-410, gnl|Mm7|chr3 (116697511-116697102)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-410, gnl|bosTau2|chr3 (35329091-35329497)
               

               
               1-410, gnl|Hg17|chr1 (99867040-99867449)
               

               
               1-410, gnl|Mm7|chr3 (116697511-116697102)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ret (0.3862)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ova (0.129132)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ova (0.129132)

	1-410, gnl\|bosTau2\|chr3 (35329091-35329497)
	1-410, gnl\|Hg17\|chr1 (99867040-99867449)
	1-410, gnl\|Mm7\|chr3 (116697511-116697102)

	ret (0.3862)
	sme (0.305437)
	cte (0.29274)
	spl (0.286369)
	che (0.272628)
	mgp (0.230681)
	tes (0.207814)
	cmu (0.186393)
	sag (0.182715)
	fty (0.17584)
	ova (0.129132)