Non-Coding RNA Search

Ss1.1-rret24_d12.5

Sequence:


               
               AGTATAAGATTTGTATTGATATCCCCACTATCTATCAAAAAAGCAGAAAACAGTGTGTAA
ATGTCACCACCAAAAGTTTGGACCCTGATCAAAAAGGATATGAAAAGAGTAACACCACAA
CATTTATGGCCTGCCTTGGAGGCTTTCTGGGGATTATTGGTGTAATATGTCTTTTCAGCT
GTCTCTCTCAAGAAATGAACTGTGATGGTGGACATAGCTACGTGAGAAATTACTTACAGA
AACCAACCTTTGCATTCGGTGAGCTTTATCCTCCTCTCATCAACCTCTGGGAAACAGGCA
AAGAAAAAGGTACAGGATTGGAAGTGAAAGCAACTGTTATAGGTGTGCCAACACATATGT
CCTAAAAGCAACCAACTAAATCTACTTCAAAGAAAAACTCAAAACTGTGGAACTTTTTTA
AAGAAGGCAGAGAAATTTTACTTTCTAGAAAGAAGTTCAAGCTTCATCAGTGCTGCTCCT
GACCAATGGACATATGTACAAGTTCAGCATTTTAATTAACTGGCTTCAAAGGGTACTGTG
GCAACCAAATAAAATAATTCCATTTTCTAGAACTTTCATGTAACTTTTATGTCTGGACTA
CCGTTAAAGTGGACAAAAACATTTCTGTATTTTTTTTAAGTATATAAGAGTAGTTGAACT
GAGCAATACCTCCTCCTGTGTTGTATTACACATATTAGCCACGAGTTTTTTGCAGTGACC
AGATAAACTTGAATTGACACGTGGTGTAATAAAAATGGACAAATTCTGTAGAGTAGACAC
AGTGAGTATGTGGACCTCTTTTATAAGGAAAAATACATTTTGGATTAAAATTAATTGCTT
TTGTCTTGTTTTTGTTTCTAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATAAGATTTGTATTGATATCCCCACTATCTATCAAAAAAGCAGAAAACAGTGTGTAA
ATGTCACCACCAAAAGTTTGGACCCTGATCAAAAAGGATATGAAAAGAGTAACACCACAA
CATTTATGGCCTGCCTTGGAGGCTTTCTGGGGATTATTGGTGTAATATGTCTTTTCAGCT
GTCTCTCTCAAGAAATGAACTGTGATGGTGGACATAGCTACGTGAGAAATTACTTACAGA
AACCAACCTTTGCATTCGGTGAGCTTTATCCTCCTCTCATCAACCTCTGGGAAACAGGCA
AAGAAAAAGGTACAGGATTGGAAGTGAAAGCAACTGTTATAGGTGTGCCAACACATATGT
CCTAAAAGCAACCAACTAAATCTACTTCAAAGAAAAACTCAAAACTGTGGAACTTTTTTA
AAGAAGGCAGAGAAATTTTACTTTCTAGAAAGAAGTTCAAGCTTCATCAGTGCTGCTCCT
GACCAATGGACATATGTACAAGTTCAGCATTTTAATTAACTGGCTTCAAAGGGTACTGTG
GCAACCAAATAAAATAATTCCATTTTCTAGAACTTTCATGTAACTTTTATGTCTGGACTA
CCGTTAAAGTGGACAAAAACATTTCTGTATTTTTTTTAAGTATATAAGAGTAGTTGAACT
GAGCAATACCTCCTCCTGTGTTGTATTACACATATTAGCCACGAGTTTTTTGCAGTGACC
AGATAAACTTGAATTGACACGTGGTGTAATAAAAATGGACAAATTCTGTAGAGTAGACAC
AGTGAGTATGTGGACCTCTTTTATAAGGAAAAATACATTTTGGATTAAAATTAATTGCTT
TTGTCTTGTTTTTGTTTCTAAATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr4 (29759018-29758151)
               

               
               1-864, gnl|Hg17|chr7 (110358542-110359442)
               

               
               1-864, gnl|Mm7|chr12 (39285322-39284457)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr4 (29759018-29758151)
               

               
               1-864, gnl|Hg17|chr7 (110358542-110359442)
               

               
               1-864, gnl|Mm7|chr12 (39285322-39284457)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ret (0.7724)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	1-864, gnl\|bosTau2\|chr4 (29759018-29758151)
	1-864, gnl\|Hg17\|chr7 (110358542-110359442)
	1-864, gnl\|Mm7\|chr12 (39285322-39284457)

	ret (0.7724)
	fcc (0.39557)
	elu (0.385356)
	thg (0.380373)
	sin (0.174948)
	fhi (0.169578)
	fco (0.157208)
	eru (0.120048)
	pgl (0.118483)