Non-Coding RNA Search

Ss1.1-rret24_h24.5

Sequence:


               
               ACTGAAAGCCATTCACCTTCAATTCGAGAACTGTACGAGCTTGCACACCTACAGGCCCAG
GTTCTGCGGGGTCTGCAGTGATGGCCGATGCTGCACCCCCCACAGCACCAAAACCATCCG
GGTGCAGTTCCGGTGCTCCCCAGGGAAAACCATCCAGAAACCAGTGATGGTCATTGGGAC
CTGCACCTGTCACAACAACTGTCCTCATAACAACGCGTCTTTCCTCCAAGACTTAAAGCC
AAACACCAGCAGAGGGGAAATGTAACATGTCCCTTGAGAAGCACACCTACAGAGGTAAAC
TGTAGCTTCCCACCATCAAATGAATATAAGAAAAATTACGAGGAATTATTATTCACCTCT
AAAGCCCATGTATTTTCTGTGGTCGTACAAAGTCGGTTATACTGTCTTTATTTTTAATGA
GAGATATGTTTAACTGTAAACTTGGAATCAAGGTAAGCTCGGGATAGTGCTTGGGATGAC
TTACTTTTTTGTGGTGTTTAGTGCAAATTAAAACTTCTGTAAATTTCAGGAATCAGTATA
TGTTTTACTGTGTAGACTGTATCACATTACACTCATTTTATTATACATTAGTACAACTGC
AAGAAAAGGTCACTGTAATGGATAACACAGTAAAGTCCAAGGTCATACTGACTATGTCAT
CTGACAAATATTTGGTCCTAGATTGAGGTGTGACCTAAGAGTTCTCTGTTGAGCACCCTT
TTTGAGCAGCTCAACTCTGAACTTCAAATTCCAAGATCGAAGGACACATAGAGCTCTTCC
ACTTGAAATCTAGAGGTGGTCAGTTTTCGGTGTACCTAGAAAATAATCTGTATCTACAGT
AATGGGAACTCTTGTGAATTCAATGCCCTGATGTCATAAATTGGCTCTGGTTCAGACAAA
TTGACTCCTTTCCAAAAGAAAGAAGCTAAACAGAAAACTCTGCTCTAATACAGAGATGAC
CAGCCTCTACCAGCCCTCAGACATTTTAATGTGTCTAGAAGCTACTGGGGCTCCATTAAT
AATTTTTATTAATTCATAAGAAGCAGAACATATCTGCAGGGATCCGCTCACCTTACTGAT
GAATAAGCTGAGGTCCAAAACACGTGATTACAAACTTTGATGACTTTCACACGTGCTGGT
AGTGGAATTTTGGAAATAAAGAACAAAATCAATAAGACTGAGGTGGCAAAATACCACAAA
CGCTATGGGAGTTTAGAATTCTTGTACAGGTGCCTGAAACTTATTCCTGGGCCTTGATAT
GCAAACTCATGAGCAAGATATATGTGTCTGCATATGTGTATCTAACTTGTCGGGCTATAA
GATAGGCTGCAAACTTAAATGTATACATTCTTTTAATGTCACCATAGGTGTTCAGCTTTT
CTCCTTTAAAGTATTTATATAAATATAAATTATACTTTTTTAAATATTCTTTTTACTTTC
TCTATTTGTCAGACATTACTAATAAACAAGATTTTAGCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGAAAGCCATTCACCTTCAATTCGAGAACTGTACGAGCTTGCACACCTACAGGCCCAG
GTTCTGCGGGGTCTGCAGTGATGGCCGATGCTGCACCCCCCACAGCACCAAAACCATCCG
GGTGCAGTTCCGGTGCTCCCCAGGGAAAACCATCCAGAAACCAGTGATGGTCATTGGGAC
CTGCACCTGTCACAACAACTGTCCTCATAACAACGCGTCTTTCCTCCAAGACTTAAAGCC
AAACACCAGCAGAGGGGAAATGTAACATGTCCCTTGAGAAGCACACCTACAGAGGTAAAC
TGTAGCTTCCCACCATCAAATGAATATAAGAAAAATTACGAGGAATTATTATTCACCTCT
AAAGCCCATGTATTTTCTGTGGTCGTACAAAGTCGGTTATACTGTCTTTATTTTTAATGA
GAGATATGTTTAACTGTAAACTTGGAATCAAGGTAAGCTCGGGATAGTGCTTGGGATGAC
TTACTTTTTTGTGGTGTTTAGTGCAAATTAAAACTTCTGTAAATTTCAGGAATCAGTATA
TGTTTTACTGTGTAGACTGTATCACATTACACTCATTTTATTATACATTAGTACAACTGC
AAGAAAAGGTCACTGTAATGGATAACACAGTAAAGTCCAAGGTCATACTGACTATGTCAT
CTGACAAATATTTGGTCCTAGATTGAGGTGTGACCTAAGAGTTCTCTGTTGAGCACCCTT
TTTGAGCAGCTCAACTCTGAACTTCAAATTCCAAGATCGAAGGACACATAGAGCTCTTCC
ACTTGAAATCTAGAGGTGGTCAGTTTTCGGTGTACCTAGAAAATAATCTGTATCTACAGT
AATGGGAACTCTTGTGAATTCAATGCCCTGATGTCATAAATTGGCTCTGGTTCAGACAAA
TTGACTCCTTTCCAAAAGAAAGAAGCTAAACAGAAAACTCTGCTCTAATACAGAGATGAC
CAGCCTCTACCAGCCCTCAGACATTTTAATGTGTCTAGAAGCTACTGGGGCTCCATTAAT
AATTTTTATTAATTCATAAGAAGCAGAACATATCTGCAGGGATCCGCTCACCTTACTGAT
GAATAAGCTGAGGTCCAAAACACGTGATTACAAACTTTGATGACTTTCACACGTGCTGGT
AGTGGAATTTTGGAAATAAAGAACAAAATCAATAAGACTGAGGTGGCAAAATACCACAAA
CGCTATGGGAGTTTAGAATTCTTGTACAGGTGCCTGAAACTTATTCCTGGGCCTTGATAT
GCAAACTCATGAGCAAGATATATGTGTCTGCATATGTGTATCTAACTTGTCGGGCTATAA
GATAGGCTGCAAACTTAAATGTATACATTCTTTTAATGTCACCATAGGTGTTCAGCTTTT
CTCCTTTAAAGTATTTATATAAATATAAATTATACTTTTTTAAATATTCTTTTTACTTTC
TCTATTTGTCAGACATTACTAATAAACAAGATTTTAGCAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-163, - strand, RNAz p=0.968913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-163, - strand, RNAz p=0.968913

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               25-152, - strand, RNAmicro p=0.99845

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               25-152, - strand, RNAmicro p=0.99845

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-505, gnl|bosTau2|chr14 (26106603-26107103)
               

               
               5-505, gnl|Hg17|chr8 (120504293-120504784)
               

               
               5-505, gnl|Mm7|chr15 (54812365-54812848)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-505, gnl|bosTau2|chr14 (26106603-26107103)
               

               
               5-505, gnl|Hg17|chr8 (120504293-120504784)
               

               
               5-505, gnl|Mm7|chr15 (54812365-54812848)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               amn (13.7845)
               

               
               aor (10.1543)
               

               
               gul (6.74836)
               

               
               ret (2.18847)
               

               
               spc (1.13366)
               

               
               tra (0.61546)
               

               
               jca (0.45584)
               

               
               lin (0.436808)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               sug (0.381874)
               

               
               pan (0.23596)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ese (0.126502)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (13.7845)
               

               
               aor (10.1543)
               

               
               gul (6.74836)
               

               
               ret (2.18847)
               

               
               spc (1.13366)
               

               
               tra (0.61546)
               

               
               jca (0.45584)
               

               
               lin (0.436808)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               sug (0.381874)
               

               
               pan (0.23596)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ese (0.126502)

	5-505, gnl\|bosTau2\|chr14 (26106603-26107103)
	5-505, gnl\|Hg17\|chr8 (120504293-120504784)
	5-505, gnl\|Mm7\|chr15 (54812365-54812848)

	amn (13.7845)
	aor (10.1543)
	gul (6.74836)
	ret (2.18847)
	spc (1.13366)
	tra (0.61546)
	jca (0.45584)
	lin (0.436808)
	pla (0.401016)
	ute (0.398353)
	sug (0.381874)
	pan (0.23596)
	mgm (0.180343)
	rec (0.17307)
	eye (0.170503)
	tbr (0.154178)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	nca (0.136874)
	ese (0.126502)