Non-Coding RNA Search

Ss1.1-rret24_h6.5

Sequence:


               
               TAGATGTTGACTTCACTGATATTAGTGAGAATCTAGCTAAAAAATTAAAGCCTTCTGGAA
CTGAAGAAGCTTGCTGCCCCAAATTGGTGCCCTATCTATTGAGTTCTGTTGTGGTTCACT
CTGGTGTATCCTCTGAAAGCGGGCATTACTATTCTTATGCCAGAAACATCACAGGTACCG
AGTGCTCATACCAGCTGTGTCACCAGCCTGAAACTCTGGCACTAGCCTCCTCCCAGGGTC
ATTTACCAGGAAGAGATAGTCCCAGTGCAGTTATTGAACAGGATTTGGAAAATAAGGAAA
TGTCAAAAGAGTGGTTTTTATTTAATGACAGCAGAGTGACATTTACTTCATTTCAGTCAG
TCCAGAAAATTACGAGTAGATTTCCAAAGGACACAGCTTATGTGCTTTTGTACAAAAAGC
AGAACAGCACTAATAGTTTAGGTGGTAGTAATTCAACCACTGGACTCTGGGTAAATGGAG
ACCCACCTCTACAGAAAGAACTAATGGAAGCTATAACAAAAGACAATAAACTATATTTAC
AGGAACAAGAGTTGAATGCTCGAGCCCGGGCCCTGCAAGCTGCATCTGCCTCCTGTTCAT
TTCGGCCCAATGGATTTGATGACAATGATCCACCAGGAAGCTGTGGACCAACTGGTGGTG
GGGGTGGAGGAGGATTTAATACAGTTGGCAGACTCGTATTTTGATGCTGAGAGAGTCTAA
AATGCAATGGTCACAAAACATGCGATACCATCTATGACTGTTAAAATGTCAGACTGTAAC
AAATATCATATCTATTATTTTTCTTTTCATTAGACCCTTATACTTTAAGAAAATACACTC
AGTGCTTGTTTTTATTTTCTTGATAATACATTTATTAACAAAATGCATCATGGGAAAAAA
ATCTACCTCTTAAAATTCCATTTGCTTTTATGGTTAGACGTGCTTGACCAAAAAATTTTC
AGAGGAAAATATGTACCTGGTCCCTAATTAAGCTGCATTAAATTTAGTAGAGGCATTTAA
ATTGTCCTGTCCTCAGTTTTACTGAAGAAAAAAAATAGATTCCATTTAGCATCCTTTATA
AAAGAATTGATATTAGAGGTTAAAGAAATATTGTTTAAAAAGAAAATCTTTTATTTCTTG
TGTAGTTAGCCCATTATTAAATTCAAGTCTTTAAGAATTCTAGAGATGATACAGTCTCTC
ATGAAGGCAATAACAAAAAATGTATCAAGCTGTAGTACTTTTCAGGTTTGTTCAGTGCTG
TCTTCAACATCACTGTATCTACATTTCAAGTACAAATTTTTTTTTAAAAAAGGATTATTT
ATACATATGTGCTGAATTGATTTTAAGAAAGGTGCATGATCCTGTAGGAGCAATGTTTTT
ACCTAAAAATTGTTAACTTTGTAGTATTTCTAATTGAGGATTTTAAAAATTCTATTTCAG
GGAGTATATTCTTCTGTGTGTTTCGAAGGAGGTGAGTTCTGTATGTGCCTTGCAGTACTG
TAATTCAAAAATAGGAATCTTTGGCTGCGGAAAAGTTTTTTTTTAAATGAAATGTTAGGA
AGTAATTTTTTGTGCTAATACTAAAATTATAACTTTTTGAAAGGTATTAGATTTTCCTGA
AGTAAAATCTGATGGTTCTAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATGTTGACTTCACTGATATTAGTGAGAATCTAGCTAAAAAATTAAAGCCTTCTGGAA
CTGAAGAAGCTTGCTGCCCCAAATTGGTGCCCTATCTATTGAGTTCTGTTGTGGTTCACT
CTGGTGTATCCTCTGAAAGCGGGCATTACTATTCTTATGCCAGAAACATCACAGGTACCG
AGTGCTCATACCAGCTGTGTCACCAGCCTGAAACTCTGGCACTAGCCTCCTCCCAGGGTC
ATTTACCAGGAAGAGATAGTCCCAGTGCAGTTATTGAACAGGATTTGGAAAATAAGGAAA
TGTCAAAAGAGTGGTTTTTATTTAATGACAGCAGAGTGACATTTACTTCATTTCAGTCAG
TCCAGAAAATTACGAGTAGATTTCCAAAGGACACAGCTTATGTGCTTTTGTACAAAAAGC
AGAACAGCACTAATAGTTTAGGTGGTAGTAATTCAACCACTGGACTCTGGGTAAATGGAG
ACCCACCTCTACAGAAAGAACTAATGGAAGCTATAACAAAAGACAATAAACTATATTTAC
AGGAACAAGAGTTGAATGCTCGAGCCCGGGCCCTGCAAGCTGCATCTGCCTCCTGTTCAT
TTCGGCCCAATGGATTTGATGACAATGATCCACCAGGAAGCTGTGGACCAACTGGTGGTG
GGGGTGGAGGAGGATTTAATACAGTTGGCAGACTCGTATTTTGATGCTGAGAGAGTCTAA
AATGCAATGGTCACAAAACATGCGATACCATCTATGACTGTTAAAATGTCAGACTGTAAC
AAATATCATATCTATTATTTTTCTTTTCATTAGACCCTTATACTTTAAGAAAATACACTC
AGTGCTTGTTTTTATTTTCTTGATAATACATTTATTAACAAAATGCATCATGGGAAAAAA
ATCTACCTCTTAAAATTCCATTTGCTTTTATGGTTAGACGTGCTTGACCAAAAAATTTTC
AGAGGAAAATATGTACCTGGTCCCTAATTAAGCTGCATTAAATTTAGTAGAGGCATTTAA
ATTGTCCTGTCCTCAGTTTTACTGAAGAAAAAAAATAGATTCCATTTAGCATCCTTTATA
AAAGAATTGATATTAGAGGTTAAAGAAATATTGTTTAAAAAGAAAATCTTTTATTTCTTG
TGTAGTTAGCCCATTATTAAATTCAAGTCTTTAAGAATTCTAGAGATGATACAGTCTCTC
ATGAAGGCAATAACAAAAAATGTATCAAGCTGTAGTACTTTTCAGGTTTGTTCAGTGCTG
TCTTCAACATCACTGTATCTACATTTCAAGTACAAATTTTTTTTTAAAAAAGGATTATTT
ATACATATGTGCTGAATTGATTTTAAGAAAGGTGCATGATCCTGTAGGAGCAATGTTTTT
ACCTAAAAATTGTTAACTTTGTAGTATTTCTAATTGAGGATTTTAAAAATTCTATTTCAG
GGAGTATATTCTTCTGTGTGTTTCGAAGGAGGTGAGTTCTGTATGTGCCTTGCAGTACTG
TAATTCAAAAATAGGAATCTTTGGCTGCGGAAAAGTTTTTTTTTAAATGAAATGTTAGGA
AGTAATTTTTTGTGCTAATACTAAAATTATAACTTTTTGAAAGGTATTAGATTTTCCTGA
AGTAAAATCTGATGGTTCTAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824913|ref|XP_613971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824913|ref|XP_613971.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               611-729, + strand, RNAz p=0.61791

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               611-729, + strand, RNAz p=0.61791

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032557, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032557, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               532-1643, gnl|bosTau2|chr17 (8541761-8542870)
               

               
               532-1643, gnl|Hg17|chr4 (144499043-144500123)
               

               
               532-1643, gnl|Mm7|chr8 (79521366-79520324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               532-1643, gnl|bosTau2|chr17 (8541761-8542870)
               

               
               532-1643, gnl|Hg17|chr4 (144499043-144500123)
               

               
               532-1643, gnl|Mm7|chr8 (79521366-79520324)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               liv (0.438853)
               

               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

	532-1643, gnl\|bosTau2\|chr17 (8541761-8542870)
	532-1643, gnl\|Hg17\|chr4 (144499043-144500123)
	532-1643, gnl\|Mm7\|chr8 (79521366-79520324)

	liv (0.438853)
	ret (0.3862)
	vin (0.332557)
	tra (0.246184)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	che (0.136314)
	ute (0.132784)
	thg (0.126791)
	ebs (0.118301)