Ss1.1-rret24_i8.5
|
AAATGACGTTAAGAAGAGTTCAAAGGTTTTTAATTCTGCTTTGGACGTAGGGATCCTAAC
TGTGTTGAGGCATTAGAATTATTTAAACTTATAAAAGTGGGTTCCCACTGTACCAGCACG
GTGTCTTACTGACAGGGGCAGTTGCCAAGAGGTACCAGATTGGCCGTGGATCAGGATTTT
GTGCAAATGCACATCCTTCTGCCCCTCCTGAATCATCACTGGCTAGTGTTCGGAACCGAG
AGAGGCCTGTGAGCGTTTTCCATTCTCCTAAATGTTTTGAACTGATCTTCGTGACTTGTG
CTTTGACAGCTTCTCTCATGTGTCAGAGTAATATTTTGAGTTAGCATTTTCCAGGGTTTT
TTTTTTTTAAAAAAAAAGGAAAAGGGAAATGTCCCTGTTTTCTTTGTGCTTCTCATTTCT
CCTTTGTTGATGCAATTCTGTGAGGCTTTTTCTCCTCCCTGAAATGCTTTCTAGTGCATG
ATTATCTTCATCACCATTATTTTAACAATAGTAATGCACAATTCTCAGAAGCCTATTTTT
AAAACAGAAGCAAAAAAACAAAAAACCCTCCCTCTTTTCTCTCATTTTATCTTTCTGTGT
TGATTACTAATCACTTTAGCTATTGTTGCTAGTGGATGTATGGTAGATGGATTGAAGCTT
TTCTGATAATTATTACACAATATAAAACAATATATATTTAAAATAAATATATACAGTAAA
TGTATTGAGCCATGTTAACCTGCCAATGAGATCTGTGAAAAAGTAATGGCCTCATTTTTC
CCTTTTTAATTTCTTTACCTTTTTGTGAAGCGGCTATACGTGGCATACATGTATTTTTAA
AGACTAGGTATAGAGTGTTTTTCTTTTTTTTTCTTTTTTTACACTTTTAGCATGTGGTGT
TGAAGTATTACCGTAGATCAAGTTTGTCTTCCGCACTCAGATGTGAGGAATTTGTGATTT
GTTCTCTCCACCACAATTGAATTACACATTTATTATCTTCTATCATTTTGAAACACTGCA
GTTTACCATGGGACACTGTATATATTTCTTGCCATAATGGTAAATGACTGATTGATATAT
TTAAGAGTTAATAAATTTGTGATTTCTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAATGACGTTAAGAAGAGTTCAAAGGTTTTTAATTCTGCTTTGGACGTAGGGATCCTAAC
TGTGTTGAGGCATTAGAATTATTTAAACTTATAAAAGTGGGTTCCCACTGTACCAGCACG
GTGTCTTACTGACAGGGGCAGTTGCCAAGAGGTACCAGATTGGCCGTGGATCAGGATTTT
GTGCAAATGCACATCCTTCTGCCCCTCCTGAATCATCACTGGCTAGTGTTCGGAACCGAG
AGAGGCCTGTGAGCGTTTTCCATTCTCCTAAATGTTTTGAACTGATCTTCGTGACTTGTG
CTTTGACAGCTTCTCTCATGTGTCAGAGTAATATTTTGAGTTAGCATTTTCCAGGGTTTT
TTTTTTTTAAAAAAAAAGGAAAAGGGAAATGTCCCTGTTTTCTTTGTGCTTCTCATTTCT
CCTTTGTTGATGCAATTCTGTGAGGCTTTTTCTCCTCCCTGAAATGCTTTCTAGTGCATG
ATTATCTTCATCACCATTATTTTAACAATAGTAATGCACAATTCTCAGAAGCCTATTTTT
AAAACAGAAGCAAAAAAACAAAAAACCCTCCCTCTTTTCTCTCATTTTATCTTTCTGTGT
TGATTACTAATCACTTTAGCTATTGTTGCTAGTGGATGTATGGTAGATGGATTGAAGCTT
TTCTGATAATTATTACACAATATAAAACAATATATATTTAAAATAAATATATACAGTAAA
TGTATTGAGCCATGTTAACCTGCCAATGAGATCTGTGAAAAAGTAATGGCCTCATTTTTC
CCTTTTTAATTTCTTTACCTTTTTGTGAAGCGGCTATACGTGGCATACATGTATTTTTAA
AGACTAGGTATAGAGTGTTTTTCTTTTTTTTTCTTTTTTTACACTTTTAGCATGTGGTGT
TGAAGTATTACCGTAGATCAAGTTTGTCTTCCGCACTCAGATGTGAGGAATTTGTGATTT
GTTCTCTCCACCACAATTGAATTACACATTTATTATCTTCTATCATTTTGAAACACTGCA
GTTTACCATGGGACACTGTATATATTTCTTGCCATAATGGTAAATGACTGATTGATATAT
TTAAGAGTTAATAAATTTGTGATTTCTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
3-565, gnl|bosTau2|chr6 (4367834-4367249) |
|
3-565, gnl|canFam2|chr32 (36147577-36147927) |
|
3-565, gnl|echTel1|scaffold_264695 (8618-8974) |
|
3-565, gnl|galGal2|chr4 (57222301-57221910) |
|
3-565, gnl|hg17|chr4 (114731738-114732105) |
|
3-565, gnl|Hg17|chr4 (114732323-114731736) |
|
3-565, gnl|loxAfr1|scaffold_42 (248339-248708) |
|
3-565, gnl|mm7|chr3 (126682173-126681817) |
|
3-565, gnl|Mm7|chr3 (126681610-126682172) |
|
3-565, gnl|monDom2|scaffold_9 (80398721-80398331) |
|
3-565, gnl|oryCun1|scaffold_181477 (4293-3926) |
|
3-565, gnl|panTro1|chr3 (131396348-131396713) |
|
3-565, gnl|rheMac2|chr5 (106314626-106314994) |
|
3-565, gnl|rn3|chr2 (224095908-224095554) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-565, gnl|bosTau2|chr6 (4367834-4367249) |
|
3-565, gnl|canFam2|chr32 (36147577-36147927) |
|
3-565, gnl|echTel1|scaffold_264695 (8618-8974) |
|
3-565, gnl|galGal2|chr4 (57222301-57221910) |
|
3-565, gnl|hg17|chr4 (114731738-114732105) |
|
3-565, gnl|Hg17|chr4 (114732323-114731736) |
|
3-565, gnl|loxAfr1|scaffold_42 (248339-248708) |
|
3-565, gnl|mm7|chr3 (126682173-126681817) |
|
3-565, gnl|Mm7|chr3 (126681610-126682172) |
|
3-565, gnl|monDom2|scaffold_9 (80398721-80398331) |
|
3-565, gnl|oryCun1|scaffold_181477 (4293-3926) |
|
3-565, gnl|panTro1|chr3 (131396348-131396713) |
|
3-565, gnl|rheMac2|chr5 (106314626-106314994) |
|
3-565, gnl|rn3|chr2 (224095908-224095554) |
|
ret (0.7724) |
|
vin (0.665115) |
|
tbr (0.616713) |
|
hea (0.613497) |
|
liv (0.585137) |
|
lin (0.582411) |
|
fco (0.471624) |
|
bfe (0.449573) |
|
nms (0.427716) |
|
fcc (0.39557) |
|
tra (0.369276) |
|
fty (0.351679) |
|
fbs (0.350693) |
|
isp (0.300752) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
rec (0.17307) |
|
eye (0.170503) |
|
cje (0.165235) |
|
ski (0.146735) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
sug (0.127291) |
|
eru (0.120048) |
|
jca (0.11396) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ret (0.7724) |
|
vin (0.665115) |
|
tbr (0.616713) |
|
hea (0.613497) |
|
liv (0.585137) |
|
lin (0.582411) |
|
fco (0.471624) |
|
bfe (0.449573) |
|
nms (0.427716) |
|
fcc (0.39557) |
|
tra (0.369276) |
|
fty (0.351679) |
|
fbs (0.350693) |
|
isp (0.300752) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
rec (0.17307) |
|
eye (0.170503) |
|
cje (0.165235) |
|
ski (0.146735) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
sug (0.127291) |
|
eru (0.120048) |
|
jca (0.11396) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
eje (0.0988338) |
