Non-Coding RNA Search

Ss1.1-rret24_l10.5

Sequence:


               
               TATTAAAACAATTTCAATTAAATACTTTTGTGTATAGAAATTGTCTGTAGTAGGTAGATA
GAAAAACAAAATGTCTGTTTACGTGTTTTATTTCAGAACTAAGGAGAAATGCCAAAGAGG
AATCCTTCACTGCGATAGGAGAATATTCAAGTGTTCTCTTGGACTGTATATAAATCTTTA
ATAAATTTTAGAATTGATAAATATCTTTTTGCGGAGGTCTTTAAAAGTGTTCAGTTTATC
AGAATCTCCACATATTATCAGCTTTAACCTAAAGCATTTTAAGATTTTTTTTAAAAGCTT
GAATTTCTCCAGTGTATGAGATAGTTCAGGACAATCTCTTAACACTTTTTAGAGGAAACA
GTTTGCAAAATAAGGGCAGCTAATCTCATACCCTATAATTGAATTTAAATAATTTGATTG
TGTCCAAAAAATACAAAGGCAGTGTTGGACTTTGGGGACAATAGTAGCATATTCTCTAGA
GTGGTTATACCTTTAAAAAAATGAAGTAATGTCTGTCTTCATATTTTAGGAGGTTATATA
TAAATAGTCTTGAAATCAATGTAGTTTATTTATTTAAAAGATAAAAGTGTATCCTGAAAG
GGATCATTAATGCATAATCTGAAGACATTTTTCATAAAACAAACTTAATACATTTTGGTT
GTACATCTTGCTAGTGTTTTTTGAAGTACATAACTTAAAATATTAATTGTCTTGTATGAT
TAGAATATGTGAATGAGTAATTTATTTTGTGTCAGGAATGTTTTGGTACTTACTATGTTT
TCACGGGAACCACTGATGTATCAGCAGATAACTATTGTGTTATATAACATGTTCTGAAGA
GCATAGTTATTGTGCATAACAAATTGTGCCTCTTAAGTGTATACAGGTAATTCACTTTTA
ATGTAAATAAATACTACTTTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAAAACAATTTCAATTAAATACTTTTGTGTATAGAAATTGTCTGTAGTAGGTAGATA
GAAAAACAAAATGTCTGTTTACGTGTTTTATTTCAGAACTAAGGAGAAATGCCAAAGAGG
AATCCTTCACTGCGATAGGAGAATATTCAAGTGTTCTCTTGGACTGTATATAAATCTTTA
ATAAATTTTAGAATTGATAAATATCTTTTTGCGGAGGTCTTTAAAAGTGTTCAGTTTATC
AGAATCTCCACATATTATCAGCTTTAACCTAAAGCATTTTAAGATTTTTTTTAAAAGCTT
GAATTTCTCCAGTGTATGAGATAGTTCAGGACAATCTCTTAACACTTTTTAGAGGAAACA
GTTTGCAAAATAAGGGCAGCTAATCTCATACCCTATAATTGAATTTAAATAATTTGATTG
TGTCCAAAAAATACAAAGGCAGTGTTGGACTTTGGGGACAATAGTAGCATATTCTCTAGA
GTGGTTATACCTTTAAAAAAATGAAGTAATGTCTGTCTTCATATTTTAGGAGGTTATATA
TAAATAGTCTTGAAATCAATGTAGTTTATTTATTTAAAAGATAAAAGTGTATCCTGAAAG
GGATCATTAATGCATAATCTGAAGACATTTTTCATAAAACAAACTTAATACATTTTGGTT
GTACATCTTGCTAGTGTTTTTTGAAGTACATAACTTAAAATATTAATTGTCTTGTATGAT
TAGAATATGTGAATGAGTAATTTATTTTGTGTCAGGAATGTTTTGGTACTTACTATGTTT
TCACGGGAACCACTGATGTATCAGCAGATAACTATTGTGTTATATAACATGTTCTGAAGA
GCATAGTTATTGTGCATAACAAATTGTGCCTCTTAAGTGTATACAGGTAATTCACTTTTA
ATGTAAATAAATACTACTTTGCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-924, gnl|bosTau2|chr1 (14758023-14758947)
               

               
               3-924, gnl|Hg17|chr21 (14666236-14665320)
               

               
               3-924, gnl|Mm7|chr16 (75753703-75752891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-924, gnl|bosTau2|chr1 (14758023-14758947)
               

               
               3-924, gnl|Hg17|chr21 (14666236-14665320)
               

               
               3-924, gnl|Mm7|chr16 (75753703-75752891)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ret (0.643666)
               

               
               fco (0.628832)
               

               
               pro (0.512033)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               fco (0.628832)
               

               
               pro (0.512033)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	3-924, gnl\|bosTau2\|chr1 (14758023-14758947)
	3-924, gnl\|Hg17\|chr21 (14666236-14665320)
	3-924, gnl\|Mm7\|chr16 (75753703-75752891)

	ret (0.643666)
	fco (0.628832)
	pro (0.512033)
	mgp (0.230681)
	tes (0.207814)
	fbs (0.175346)
	fhi (0.169578)
	lun (0.150489)
	bfe (0.149858)
	ova (0.129132)
	thg (0.126791)
	ebs (0.118301)
	ecc (0.115035)