Non-Coding RNA Search

Ss1.1-rret24_m9.5

Sequence:


               
               ATGGGAGGCATCTAAAAACAACATAAGTCAGCTCTTTACAATGTGAAGGGAACAATGCTC
AATGATTTTATTTAACATGCAACTGCTTCTATCTCTAATATGAATTACTGTGGTGAAAAA
CATCATAAAAGCACACTCTGTAGTTATTGTTTAACAAGCAGATTTTCCATATTTGGTTTC
TTGCCAGCTAAGCAAACTGCCCACATATACATGATTTATTTATGTACATTTCTCAGTTTA
TGAAGCTGTTATTTGTACCTTTTTCCTTTATATTCTTTTATTCCCATGATTCTTATTTCA
CAAAGCTTTGTGCTGAATAATGTAAAGTAGACATGTTGATGGAACAAAATATATTATTCC
CATATCTATAAGGTGTAGATTTGTAAGTCTAACTTGGTGTTTTGCTTTCAATCTCTATCA
TTGGAAAAACATGCCTTTAGAAACGTTGCAATTCCAATATCCTTTAATAATATATAAACA
TTTTAATCAGTCCAAAATGTTGGGTTACTATCTCTGTGAATACTCTAAACATTCCCATAA
GAATGGAAAGTGAATTTTTTTCTGTCTAAAGAAATTATTTCAGTGAATTAGCCAATTATG
TTTCCCCTAATAAAAAAATCTCAAATGTTTATGTCACCAGTACAAACACATTTTTGTCTT
CTATCATCATGTGTTTATGCCAGTAAGACTTGTACTAGAACCTCATTCAGCCTCTGAATG
TTAGTGGAATTCGGTGATGATTTAAGGTTTTTCCCCATGTATTTTCACTGGCACTAGCAA
ATTGACAATATGAACTAAAGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGAGGCATCTAAAAACAACATAAGTCAGCTCTTTACAATGTGAAGGGAACAATGCTC
AATGATTTTATTTAACATGCAACTGCTTCTATCTCTAATATGAATTACTGTGGTGAAAAA
CATCATAAAAGCACACTCTGTAGTTATTGTTTAACAAGCAGATTTTCCATATTTGGTTTC
TTGCCAGCTAAGCAAACTGCCCACATATACATGATTTATTTATGTACATTTCTCAGTTTA
TGAAGCTGTTATTTGTACCTTTTTCCTTTATATTCTTTTATTCCCATGATTCTTATTTCA
CAAAGCTTTGTGCTGAATAATGTAAAGTAGACATGTTGATGGAACAAAATATATTATTCC
CATATCTATAAGGTGTAGATTTGTAAGTCTAACTTGGTGTTTTGCTTTCAATCTCTATCA
TTGGAAAAACATGCCTTTAGAAACGTTGCAATTCCAATATCCTTTAATAATATATAAACA
TTTTAATCAGTCCAAAATGTTGGGTTACTATCTCTGTGAATACTCTAAACATTCCCATAA
GAATGGAAAGTGAATTTTTTTCTGTCTAAAGAAATTATTTCAGTGAATTAGCCAATTATG
TTTCCCCTAATAAAAAAATCTCAAATGTTTATGTCACCAGTACAAACACATTTTTGTCTT
CTATCATCATGTGTTTATGCCAGTAAGACTTGTACTAGAACCTCATTCAGCCTCTGAATG
TTAGTGGAATTCGGTGATGATTTAAGGTTTTTCCCCATGTATTTTCACTGGCACTAGCAA
ATTGACAATATGAACTAAAGTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-398, - strand, RNAz p=0.943069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-398, - strand, RNAz p=0.943069

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr12 (22756350-22755536)
               

               
               1-804, gnl|Hg17|chr13 (70910023-70909189)
               

               
               1-804, gnl|Mm7|chr14 (92138591-92137833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr12 (22756350-22755536)
               

               
               1-804, gnl|Hg17|chr13 (70910023-70909189)
               

               
               1-804, gnl|Mm7|chr14 (92138591-92137833)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.257467)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               pgl (0.118483)

	1-804, gnl\|bosTau2\|chr12 (22756350-22755536)
	1-804, gnl\|Hg17\|chr13 (70910023-70909189)
	1-804, gnl\|Mm7\|chr14 (92138591-92137833)