Non-Coding RNA Search

Ss1.1-rret24_n12.5

Sequence:


               
               TGCAGTCATTTTTATGGGTACCTCTTGTCTGATTCGTGCCAGAAGCAACATGGATGAAGC
AAATCAGCCTCTCCTCACTGATCAGTATCAACACTATGCCGAAGAATATGAAAAAATCCA
GAATCCTAATCAGTCTATGGTCTGATGATAGATGACATATTCTCTTATGCATTAGTATCA
TAAAACCACTTGGTTCAAAAATAATAGATGAGTTACTAACTACAGTGTCTTTCATTCTGT
TACTTCATTCCTTATGCATGCACATGTTGGAATTAAAAGCTTAGTTATTATTTTGCAGAA
CTGGGGAAAGTCACTCTCTTTTCAACGGTTTCTATTTCTCAGCTCTCTTTAGAATGATGG
GTGGCACCATCTAGTATTTAAGCAGATAGTGTGAAGATTTTTGGTATGTTTTAAAGGTCA
ACTATACAACAATATGAATAACTTTGTGTACTTTCTTTTTATTGCAAAGTAAATCTCTGA
TAAAAATACATGAGTAGGACACAAATGAATTTATTTATGAAACAGAAACAGACTCAGAGA
CCTAGAAAACAAACAGACTTCTGGTTACCAAAGTGGGGAAGGGGTGAGAGATAAATTAGG
AGATTTGGATTAGCAGATACAAACTATTACATATACAACAGAAAAAAAACAAGGTCCTAT
TGTATAGCACAGGGAACTATATTCAATACCCTGTAATAAACTGTAATGGAAAAGAATATG
AAAAATATGTGTATATATGTATAACTGAATCACTTTGCTGTATACCAGAAACTAACACGA
CATAGTAAATCCACTATACTTCAATAAAAAAATTTTAAAAAACATAAGGAGGCATTTCTA
CAATGTTAAGATATAAATACATTTTCATTCATTGACAGTGAACAACTGATATAAAGGAAG
CTACACTTGTACTTAAAATTAATTTTGTGAAGTTATAAATGGGATCCCAATCAACTTTTT
CAAACTTGTCTTCCCATTTGGGAATCATACTGTTTAGTCTAAGATTCAAGGGCACAATAA
ATAACAATCTTTGCCACACTTTGGAGAGGTAAATGATTTATTTTGTTAAAAGATAGTTGG
TGGTGCCTTTGTTTTCAACTGCATTCTTCTACTTTTCAATTCACTACCTACAATATATTT
TACCTCACAATTTCTCTTCTAAGATCTTAGAGATCCACAAAGAAAGCATAAAGGTAGAGA
AAATGTGTGATAGTGCTCTACAAATAGCACTTGGTTCATAATGTTGAATTCAAATACCAT
TCTCTTGTCATTTATCAGCTTTCTTTTCAAAATAAAATATTAAAATATTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGTCATTTTTATGGGTACCTCTTGTCTGATTCGTGCCAGAAGCAACATGGATGAAGC
AAATCAGCCTCTCCTCACTGATCAGTATCAACACTATGCCGAAGAATATGAAAAAATCCA
GAATCCTAATCAGTCTATGGTCTGATGATAGATGACATATTCTCTTATGCATTAGTATCA
TAAAACCACTTGGTTCAAAAATAATAGATGAGTTACTAACTACAGTGTCTTTCATTCTGT
TACTTCATTCCTTATGCATGCACATGTTGGAATTAAAAGCTTAGTTATTATTTTGCAGAA
CTGGGGAAAGTCACTCTCTTTTCAACGGTTTCTATTTCTCAGCTCTCTTTAGAATGATGG
GTGGCACCATCTAGTATTTAAGCAGATAGTGTGAAGATTTTTGGTATGTTTTAAAGGTCA
ACTATACAACAATATGAATAACTTTGTGTACTTTCTTTTTATTGCAAAGTAAATCTCTGA
TAAAAATACATGAGTAGGACACAAATGAATTTATTTATGAAACAGAAACAGACTCAGAGA
CCTAGAAAACAAACAGACTTCTGGTTACCAAAGTGGGGAAGGGGTGAGAGATAAATTAGG
AGATTTGGATTAGCAGATACAAACTATTACATATACAACAGAAAAAAAACAAGGTCCTAT
TGTATAGCACAGGGAACTATATTCAATACCCTGTAATAAACTGTAATGGAAAAGAATATG
AAAAATATGTGTATATATGTATAACTGAATCACTTTGCTGTATACCAGAAACTAACACGA
CATAGTAAATCCACTATACTTCAATAAAAAAATTTTAAAAAACATAAGGAGGCATTTCTA
CAATGTTAAGATATAAATACATTTTCATTCATTGACAGTGAACAACTGATATAAAGGAAG
CTACACTTGTACTTAAAATTAATTTTGTGAAGTTATAAATGGGATCCCAATCAACTTTTT
CAAACTTGTCTTCCCATTTGGGAATCATACTGTTTAGTCTAAGATTCAAGGGCACAATAA
ATAACAATCTTTGCCACACTTTGGAGAGGTAAATGATTTATTTTGTTAAAAGATAGTTGG
TGGTGCCTTTGTTTTCAACTGCATTCTTCTACTTTTCAATTCACTACCTACAATATATTT
TACCTCACAATTTCTCTTCTAAGATCTTAGAGATCCACAAAGAAAGCATAAAGGTAGAGA
AAATGTGTGATAGTGCTCTACAAATAGCACTTGGTTCATAATGTTGAATTCAAATACCAT
TCTCTTGTCATTTATCAGCTTTCTTTTCAAAATAAAATATTAAAATATTAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37517|emb|CAA43288.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37517|emb|CAA43288.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               575-770, - strand, RNAz p=0.999279

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               575-770, - strand, RNAz p=0.999279

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               344-978, gnl|bosTau2|chr8 (17232641-17231972)
               


               
               482-932, gnl|bosTau2|chr21 (24296824-24296380)
               


               
               485-873, gnl|bosTau2|chr11 (76889908-76890284)
               


               
               493-872, gnl|bosTau2|chr11 (23407328-23407707)
               


               
               498-848, gnl|bosTau2|chr10 (47542954-47543284)
               


               
               499-831, gnl|bosTau2|chr10 (45370921-45371255)
               


               
               1000-1302, gnl|bosTau2|chr8 (17231972-17231668)
               

               
               1000-1302, gnl|canFam2|chr11 (36362744-36363073)
               

               
               1000-1302, gnl|echTel1|scaffold_277018 (55941-55536)
               

               
               1000-1302, gnl|hg17|chr9 (12699739-12700063)
               

               
               1000-1302, gnl|Hg17|chr9 (12699762-12700089)
               

               
               1000-1302, gnl|loxAfr1|scaffold_2847 (105442-105114)
               

               
               1000-1302, gnl|mm7|chr4 (80255107-80255408)
               

               
               1000-1302, gnl|Mm7|chr4 (80255128-80255424)
               

               
               1000-1302, gnl|oryCun1|scaffold_184533 (7983-8294)
               

               
               1000-1302, gnl|panTro1|chr11 (12896694-12897017)
               

               
               1000-1302, gnl|rheMac2|chr15 (64222528-64222205)
               

               
               1000-1302, gnl|rn3|chr5 (99542171-99542478)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               344-978, gnl|bosTau2|chr8 (17232641-17231972)
               


               
               482-932, gnl|bosTau2|chr21 (24296824-24296380)
               


               
               485-873, gnl|bosTau2|chr11 (76889908-76890284)
               


               
               493-872, gnl|bosTau2|chr11 (23407328-23407707)
               


               
               498-848, gnl|bosTau2|chr10 (47542954-47543284)
               


               
               499-831, gnl|bosTau2|chr10 (45370921-45371255)
               


               
               1000-1302, gnl|bosTau2|chr8 (17231972-17231668)
               

               
               1000-1302, gnl|canFam2|chr11 (36362744-36363073)
               

               
               1000-1302, gnl|echTel1|scaffold_277018 (55941-55536)
               

               
               1000-1302, gnl|hg17|chr9 (12699739-12700063)
               

               
               1000-1302, gnl|Hg17|chr9 (12699762-12700089)
               

               
               1000-1302, gnl|loxAfr1|scaffold_2847 (105442-105114)
               

               
               1000-1302, gnl|mm7|chr4 (80255107-80255408)
               

               
               1000-1302, gnl|Mm7|chr4 (80255128-80255424)
               

               
               1000-1302, gnl|oryCun1|scaffold_184533 (7983-8294)
               

               
               1000-1302, gnl|panTro1|chr11 (12896694-12897017)
               

               
               1000-1302, gnl|rheMac2|chr15 (64222528-64222205)
               

               
               1000-1302, gnl|rn3|chr5 (99542171-99542478)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ret (4.37693)
               

               
               eye (0.170503)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (4.37693)
               

               
               eye (0.170503)
               

               
               tra (0.123092)

	344-978, gnl\|bosTau2\|chr8 (17232641-17231972)

	482-932, gnl\|bosTau2\|chr21 (24296824-24296380)

	485-873, gnl\|bosTau2\|chr11 (76889908-76890284)

	493-872, gnl\|bosTau2\|chr11 (23407328-23407707)

	498-848, gnl\|bosTau2\|chr10 (47542954-47543284)

	499-831, gnl\|bosTau2\|chr10 (45370921-45371255)

	1000-1302, gnl\|bosTau2\|chr8 (17231972-17231668)
	1000-1302, gnl\|canFam2\|chr11 (36362744-36363073)
	1000-1302, gnl\|echTel1\|scaffold_277018 (55941-55536)
	1000-1302, gnl\|hg17\|chr9 (12699739-12700063)
	1000-1302, gnl\|Hg17\|chr9 (12699762-12700089)
	1000-1302, gnl\|loxAfr1\|scaffold_2847 (105442-105114)
	1000-1302, gnl\|mm7\|chr4 (80255107-80255408)
	1000-1302, gnl\|Mm7\|chr4 (80255128-80255424)
	1000-1302, gnl\|oryCun1\|scaffold_184533 (7983-8294)
	1000-1302, gnl\|panTro1\|chr11 (12896694-12897017)
	1000-1302, gnl\|rheMac2\|chr15 (64222528-64222205)
	1000-1302, gnl\|rn3\|chr5 (99542171-99542478)