Non-Coding RNA Search

Ss1.1-rret24_o5.5

Sequence:


               
               CCCGAGAAGGTAACTTTCTCTCTTCCCCCAACCCCAAGTTGGATAGCATTTTCTTTCCTT
CTCTCTGGCACCAACCACATCTTTAGCTTTCCCCACCCCTACAGAAAGAACTGAAGAAAC
TTTCAAAGACCTGGCTGTTTTATTTTCTTTGGCCAAGGAAACCACTTTCTCTCAAGCAAT
TATTTCATATCCTATGAAAACTATGGTCGAATGGAAAACCCGAAACTCCAAACTTATCTA
CACCCTGTTCCTCCAGTACAAAGCCTTACTTAAAAGGGCAACTCGTTCCTACTTAGAGTG
TTTGTAGAGAATTTGTCATCACCTCTGATACCCGGTATTCGTAATACATTATGTGGAAAG
GAAATAACCTTGAACCACCTGATGTTGCCTCAAGAGCCCCAACAGTGTTTCCCCTCCTGT
GCTGATGTGTGTTAAATTATGGGGTTAAAAAAATACCAAAATTCGTTTTGTTTTCTTTTT
AAAAAGTAGAATGAACACCATTCTTCTTAATATGCCAAAATCGACTCCTCTGTTGAGTTG
GTCTCTAATTCACTAACATTGTTTTGCCACACAATCGAGAAAATATCAATCTATTGACTC
TTCACGAGAAGAGCTCTGGAGGGTATCCATGTTAAGTTTGTATATATTTATTTATGCTTA
ATTTAATGGGAATGTGTAAATATGGCGAGCAAGTAGTTTGGGATTATTTATCTGTGAATC
TATACCTCTGTGAATGGGTGGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGAGAAGGTAACTTTCTCTCTTCCCCCAACCCCAAGTTGGATAGCATTTTCTTTCCTT
CTCTCTGGCACCAACCACATCTTTAGCTTTCCCCACCCCTACAGAAAGAACTGAAGAAAC
TTTCAAAGACCTGGCTGTTTTATTTTCTTTGGCCAAGGAAACCACTTTCTCTCAAGCAAT
TATTTCATATCCTATGAAAACTATGGTCGAATGGAAAACCCGAAACTCCAAACTTATCTA
CACCCTGTTCCTCCAGTACAAAGCCTTACTTAAAAGGGCAACTCGTTCCTACTTAGAGTG
TTTGTAGAGAATTTGTCATCACCTCTGATACCCGGTATTCGTAATACATTATGTGGAAAG
GAAATAACCTTGAACCACCTGATGTTGCCTCAAGAGCCCCAACAGTGTTTCCCCTCCTGT
GCTGATGTGTGTTAAATTATGGGGTTAAAAAAATACCAAAATTCGTTTTGTTTTCTTTTT
AAAAAGTAGAATGAACACCATTCTTCTTAATATGCCAAAATCGACTCCTCTGTTGAGTTG
GTCTCTAATTCACTAACATTGTTTTGCCACACAATCGAGAAAATATCAATCTATTGACTC
TTCACGAGAAGAGCTCTGGAGGGTATCCATGTTAAGTTTGTATATATTTATTTATGCTTA
ATTTAATGGGAATGTGTAAATATGGCGAGCAAGTAGTTTGGGATTATTTATCTGTGAATC
TATACCTCTGTGAATGGGTGGTAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               564-682, - strand, RNAz p=0.924727

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               564-682, - strand, RNAz p=0.924727

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-756, gnl|bosTau2|chr23 (21583846-21583216)
               

               
               117-756, gnl|Hg17|chr6 (50922537-50923151)
               

               
               117-756, gnl|Mm7|chr1 (19428011-19428690)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-756, gnl|bosTau2|chr23 (21583846-21583216)
               

               
               117-756, gnl|Hg17|chr6 (50922537-50923151)
               

               
               117-756, gnl|Mm7|chr1 (19428011-19428690)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.3862)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)

	117-756, gnl\|bosTau2\|chr23 (21583846-21583216)
	117-756, gnl\|Hg17\|chr6 (50922537-50923151)
	117-756, gnl\|Mm7\|chr1 (19428011-19428690)