Non-Coding RNA Search

Ss1.1-rret26_d17.5

Sequence:


               
               ATATTTACCTTACAAAGATGAGCAGAGACCAGCTGTGACCATAGCCTAGCTAAGATTTTA
AAAGGGGAAATTTTGTCCCCTAGATTTTCCCCCCAAATAAACATTGCTTTATTTCTAATA
ATAACCAAGATTTTTCAAGCTTCTAGGTTTCATAGTAAAGCTTGTAATAGCAAGAAGTGT
AAATTACGAGGGAAGAATTTACCTTTTAGAAATTGCTTTGTTTTCCAAGCAGTGAGTACT
ACATACAGTACTTGTAAAGTGTTAGCTGTAAGTAAGCACAAAATGGATTTAAAATACAAA
GAAGATTTTCAGGCTGTGATTATGTTGAACATAACAACCCAATAGTCACCAAGGCAGGTA
GTGTGATAAATGAACACACCACTCTGAGGCTAATTACCTAATGGAATACAAGAGCAATGG
TCACCCGTGTTTCCTTATTCTAGCCTTTATTTCTCTGTCATTTGGACGGCTGGTCAGTGG
GGAGGAATTCAGTGGGTGATGTAATCAACTGCAAACCATCTGCCCCTGTCCCAAGAAGAT
GAGCCAGATTAGCATTAAACTGGTCCTTGTCACTCCATCTTAATACTCTGCATTAAGGCA
CCCCTTTGTCTCTAATCCTTGAGAGTTGTTTTTTAAGACATCATAATCACTTTGAACTTC
CATGAAACCTGTCTTCCACCACAACCACCCTGGGAGAGAAAAACATGCTAATAAATAAAC
AAGGTTGTCTTGGCTTAATAATTCCTTATAGCCAATATCAACAGTGGCAATCAGCACACA
GAAGAAAGGACCCAAATCACTATGTAACATAAAGATTACTGTTAATTTGAAAGAACAAAA
GCAATTAAGACAGAACTTCAGATCCTCCAATCAGGATGATTCCTAACAAATCAGTCTTTT
GTGAACATGGTGGACTTTTTGGTTACTTTAATTTGCCTATATTCTCCAGTTACATCAGAC
TCTATCTGTGGCCTTGTTCTTCATTTCAGTGTTAATCAGCTAAACAGAAGTTGTTGCTTA
TGATGTGTGAGTGAACATATGCCACTGCCTGGCCTTTTTTCTTCGGAGCTTGTTGTCTTT
TTCGCTATATTAGACTTTGCAGTATGCCCAGAAGCTTTCCTTCATAAAATAGAAAGAAAA
AAACATTTGGCTTATTTTTCACTGTAGCTAGTCTTTTATACAATAATCTTGTAAGAAAAT
TTCTTGAATTCTAAATATTACTCTTTCTAGATTTTTGAAATCGAAAAGTTTTCAGTAAAA
AGTTTCTTACTTTATTTTATTATATTAGGTAGTAAAAATGTAGGGTTATTTACCATAACC
TGTTCATTAATATCAGAAATTTACAATAGCATTTTAAGACCATAGTAGGAATCTAGCATA
CCGTGTAGTACCTATGGAGTATTGTAAGAGCTAATTGTCCGAGATGAATTGCTCATCTTG
TTCTCCAGTTTCCATTGTTGGTTTATTGCAGATTTGTATCCTGTGTCAAATGCAAGGTAT
TATTGATAAACCTTTTCAACCAGCAGCAAGAAGTTCAAAATTTTTTCTGTCACTGTAACA
GAAAACACAATATGTATATAACATTTATGTAGCAATAAATGTGCCATCTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTTACCTTACAAAGATGAGCAGAGACCAGCTGTGACCATAGCCTAGCTAAGATTTTA
AAAGGGGAAATTTTGTCCCCTAGATTTTCCCCCCAAATAAACATTGCTTTATTTCTAATA
ATAACCAAGATTTTTCAAGCTTCTAGGTTTCATAGTAAAGCTTGTAATAGCAAGAAGTGT
AAATTACGAGGGAAGAATTTACCTTTTAGAAATTGCTTTGTTTTCCAAGCAGTGAGTACT
ACATACAGTACTTGTAAAGTGTTAGCTGTAAGTAAGCACAAAATGGATTTAAAATACAAA
GAAGATTTTCAGGCTGTGATTATGTTGAACATAACAACCCAATAGTCACCAAGGCAGGTA
GTGTGATAAATGAACACACCACTCTGAGGCTAATTACCTAATGGAATACAAGAGCAATGG
TCACCCGTGTTTCCTTATTCTAGCCTTTATTTCTCTGTCATTTGGACGGCTGGTCAGTGG
GGAGGAATTCAGTGGGTGATGTAATCAACTGCAAACCATCTGCCCCTGTCCCAAGAAGAT
GAGCCAGATTAGCATTAAACTGGTCCTTGTCACTCCATCTTAATACTCTGCATTAAGGCA
CCCCTTTGTCTCTAATCCTTGAGAGTTGTTTTTTAAGACATCATAATCACTTTGAACTTC
CATGAAACCTGTCTTCCACCACAACCACCCTGGGAGAGAAAAACATGCTAATAAATAAAC
AAGGTTGTCTTGGCTTAATAATTCCTTATAGCCAATATCAACAGTGGCAATCAGCACACA
GAAGAAAGGACCCAAATCACTATGTAACATAAAGATTACTGTTAATTTGAAAGAACAAAA
GCAATTAAGACAGAACTTCAGATCCTCCAATCAGGATGATTCCTAACAAATCAGTCTTTT
GTGAACATGGTGGACTTTTTGGTTACTTTAATTTGCCTATATTCTCCAGTTACATCAGAC
TCTATCTGTGGCCTTGTTCTTCATTTCAGTGTTAATCAGCTAAACAGAAGTTGTTGCTTA
TGATGTGTGAGTGAACATATGCCACTGCCTGGCCTTTTTTCTTCGGAGCTTGTTGTCTTT
TTCGCTATATTAGACTTTGCAGTATGCCCAGAAGCTTTCCTTCATAAAATAGAAAGAAAA
AAACATTTGGCTTATTTTTCACTGTAGCTAGTCTTTTATACAATAATCTTGTAAGAAAAT
TTCTTGAATTCTAAATATTACTCTTTCTAGATTTTTGAAATCGAAAAGTTTTCAGTAAAA
AGTTTCTTACTTTATTTTATTATATTAGGTAGTAAAAATGTAGGGTTATTTACCATAACC
TGTTCATTAATATCAGAAATTTACAATAGCATTTTAAGACCATAGTAGGAATCTAGCATA
CCGTGTAGTACCTATGGAGTATTGTAAGAGCTAATTGTCCGAGATGAATTGCTCATCTTG
TTCTCCAGTTTCCATTGTTGGTTTATTGCAGATTTGTATCCTGTGTCAAATGCAAGGTAT
TATTGATAAACCTTTTCAACCAGCAGCAAGAAGTTCAAAATTTTTTCTGTCACTGTAACA
GAAAACACAATATGTATATAACATTTATGTAGCAATAAATGTGCCATCTTTTTTTTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               158-309, - strand, RNAz p=0.938638
               

               
               664-783, - strand, RNAz p=0.615299

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-309, - strand, RNAz p=0.938638
               

               
               664-783, - strand, RNAz p=0.615299

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1616, gnl|bosTau2|chr10 (35136454-35134841)
               

               
               1-1616, gnl|Hg17|chr15 (55366390-55367996)
               

               
               1-1616, gnl|Mm7|chr9 (71880693-71879128)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1616, gnl|bosTau2|chr10 (35136454-35134841)
               

               
               1-1616, gnl|Hg17|chr15 (55366390-55367996)
               

               
               1-1616, gnl|Mm7|chr9 (71880693-71879128)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               thg (0.633955)
               

               
               clu (0.598229)
               

               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.633955)
               

               
               clu (0.598229)
               

               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	158-309, - strand, RNAz p=0.938638
	664-783, - strand, RNAz p=0.615299

	1-1616, gnl\|bosTau2\|chr10 (35136454-35134841)
	1-1616, gnl\|Hg17\|chr15 (55366390-55367996)
	1-1616, gnl\|Mm7\|chr9 (71880693-71879128)

	thg (0.633955)
	clu (0.598229)
	ret (0.3862)
	liv (0.292569)
	mgp (0.230681)
	fty (0.17584)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	ssp (0.13552)
	nmm (0.132802)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)