Ss1.1-rret26_i16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGACTCCTACAGCGCCGGATAATACTGACGTCCGAGATTTCATCAACGAGAGGCTAAA GGAGCATGATCTGGATCCCACCGCCCCGCCCTATGACTCCCTGGCTACCTACGCCTACGA AGGAAACGATTCCATCGCAGAATCTCTGAGTTCTTTAGAGTCAGGTACCACTGATGGAGA CCAGAACTACGATTACCTCCGAGAATGGGGCCCTCGGTTTAATAAGCTGGCGGAAATGTA CGGGGGCGGGGAAAGTGACAAAGACTCTTAACCTAGGATATGTGTTCTGCCCAAACACGA GGAAGTAACTTTACAGACACCGTCTCCGCTTCACAATATTTGATATTCAGGAGAATTTTC CTGCCACTCAGCACAATTTTTCCATTTCCACTTAATTTGTTCCTTAATTACATTAATTCT TTCCTGTAGGATGTCTCATGGAATATATACATTTTATTTAATCACTTCCAAGAGCCAAAG CTATGGAAATCAGTGTTGTCCATCTTAGGAAATAAAAGATAATTTCAGAAACATGAACAG GATAGTTCTCCCTTAAGCAACCTCACAAACAAGCCGCTTCTGTTAAATACCTGTCCTTCC CTTGCAAATGAAGCTTTCAAAAGGTGAAGAAAAATTTTAAGGTATATCCTGTTCTGTACA TTAAATTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGACTCCTACAGCGCCGGATAATACTGACGTCCGAGATTTCATCAACGAGAGGCTAAA GGAGCATGATCTGGATCCCACCGCCCCGCCCTATGACTCCCTGGCTACCTACGCCTACGA AGGAAACGATTCCATCGCAGAATCTCTGAGTTCTTTAGAGTCAGGTACCACTGATGGAGA CCAGAACTACGATTACCTCCGAGAATGGGGCCCTCGGTTTAATAAGCTGGCGGAAATGTA CGGGGGCGGGGAAAGTGACAAAGACTCTTAACCTAGGATATGTGTTCTGCCCAAACACGA GGAAGTAACTTTACAGACACCGTCTCCGCTTCACAATATTTGATATTCAGGAGAATTTTC CTGCCACTCAGCACAATTTTTCCATTTCCACTTAATTTGTTCCTTAATTACATTAATTCT TTCCTGTAGGATGTCTCATGGAATATATACATTTTATTTAATCACTTCCAAGAGCCAAAG CTATGGAAATCAGTGTTGTCCATCTTAGGAAATAAAAGATAATTTCAGAAACATGAACAG GATAGTTCTCCCTTAAGCAACCTCACAAACAAGCCGCTTCTGTTAAATACCTGTCCTTCC CTTGCAAATGAAGCTTTCAAAAGGTGAAGAAAAATTTTAAGGTATATCCTGTTCTGTACA TTAAATTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 428-543, - strand, RNAz p=0.525369 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 428-543, - strand, RNAz p=0.525369 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-672, gnl|bosTau2|chr20 (30064335-30063651) | |
| 1-672, gnl|Hg17|chr5 (24523799-24523121) | |
| 1-672, gnl|Mm7|chr15 (19073239-19073909) | |
| 38-243, gnl|bosTau2|chr18 (27440535-27440740) | |
| 38-243, gnl|canFam2|chr5 (87128268-87127715) | |
| 38-243, gnl|danRer3|chr8 (10636829-10637379) | |
| 38-243, gnl|dasNov1|scaffold_413 (161103-160562) | |
| 38-243, gnl|echTel1|scaffold_233248 (5669-5111) | |
| 38-243, gnl|fr1|chrUn (109882203-109882785) | |
| 38-243, gnl|galGal2|chr11 (12615874-12615328) | |
| 38-243, gnl|hg17|chr16 (63538984-63539537) | |
| 38-243, gnl|Hg17|chr16 (63539243-63539038) | |
| 38-243, gnl|loxAfr1|scaffold_1093 (60057-59504) | |
| 38-243, gnl|mm7|chr8 (101228102-101228660) | |
| 38-243, gnl|Mm7|chr8 (101228361-101228156) | |
| 38-243, gnl|monDom2|scaffold_23 (23754635-23754092) | |
| 38-243, gnl|oryCun1|scaffold_173771 (48660-48108) | |
| 38-243, gnl|panTro1|chr18 (57750070-57750623) | |
| 38-243, gnl|rheMac2|chr20 (63194759-63195312) | |
| 38-243, gnl|rn3|chr19 (2380524-2379967) | |
| 38-243, gnl|tetNig1|chr17 (9523357-9522801) | |
| 38-243, gnl|xenTro1|scaffold_13 (594893-595454) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-672, gnl|bosTau2|chr20 (30064335-30063651) | |
| 1-672, gnl|Hg17|chr5 (24523799-24523121) | |
| 1-672, gnl|Mm7|chr15 (19073239-19073909) | |
| 38-243, gnl|bosTau2|chr18 (27440535-27440740) | |
| 38-243, gnl|canFam2|chr5 (87128268-87127715) | |
| 38-243, gnl|danRer3|chr8 (10636829-10637379) | |
| 38-243, gnl|dasNov1|scaffold_413 (161103-160562) | |
| 38-243, gnl|echTel1|scaffold_233248 (5669-5111) | |
| 38-243, gnl|fr1|chrUn (109882203-109882785) | |
| 38-243, gnl|galGal2|chr11 (12615874-12615328) | |
| 38-243, gnl|hg17|chr16 (63538984-63539537) | |
| 38-243, gnl|Hg17|chr16 (63539243-63539038) | |
| 38-243, gnl|loxAfr1|scaffold_1093 (60057-59504) | |
| 38-243, gnl|mm7|chr8 (101228102-101228660) | |
| 38-243, gnl|Mm7|chr8 (101228361-101228156) | |
| 38-243, gnl|monDom2|scaffold_23 (23754635-23754092) | |
| 38-243, gnl|oryCun1|scaffold_173771 (48660-48108) | |
| 38-243, gnl|panTro1|chr18 (57750070-57750623) | |
| 38-243, gnl|rheMac2|chr20 (63194759-63195312) | |
| 38-243, gnl|rn3|chr19 (2380524-2379967) | |
| 38-243, gnl|tetNig1|chr17 (9523357-9522801) | |
| 38-243, gnl|xenTro1|scaffold_13 (594893-595454) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| ret (0.128733) | |
| ecc (0.115035) |