Non-Coding RNA Search

Ss1.1-rret26_k11.5

Sequence:


               
               ATCAAAAGTGTGGTACAGCCTTTCAAAAGGGTCTAAGGCAATAGTCTCATCTGGTGAAAT
CTACTATTTGTGGAGAAGACTGCTGCCTTGCCTGCCATAGCATTGTGGATGTTTTAATCT
ATCAGTCGTAAATAATTACCTCATTGGTATACCTGCTGGCTCTTCATATGCCTGTTGTTA
ACCAAATAATGTATTTTTCTTCATAAGTAAGCCAAAAGTGGAAGCAAAACAGTAATATTA
TGATAGATTTTTCTATTGAAGTGCTCAGTTCATGTGTACTATTTCTAATAATATTAGATA
AAACTGGACAGTTTTATCTCACACCAGTTCTATGTCATTTAATGTTAGAAATAGTTCACA
TTATTAAGAAGCTATTTTAAAACAGCTATTTTTTTTGAAAAGTTGCATGTATTTATATCT
TTTCTGGGTAATTTTCTTGTTAATGTCTTATGATAGATGCTTGTCACATGAAGACTAAAC
TTGGATCTTTGGCATATTCCATATTCTATAGATAGATTGTGATATTTGTAGCTCGTACTA
GTGACTTTCAGGCCTAATGTCTCCACTTGGATTAACATTCTTTGATATCCTTTCTCATCT
CTTTCAGAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAAGTGTGGTACAGCCTTTCAAAAGGGTCTAAGGCAATAGTCTCATCTGGTGAAAT
CTACTATTTGTGGAGAAGACTGCTGCCTTGCCTGCCATAGCATTGTGGATGTTTTAATCT
ATCAGTCGTAAATAATTACCTCATTGGTATACCTGCTGGCTCTTCATATGCCTGTTGTTA
ACCAAATAATGTATTTTTCTTCATAAGTAAGCCAAAAGTGGAAGCAAAACAGTAATATTA
TGATAGATTTTTCTATTGAAGTGCTCAGTTCATGTGTACTATTTCTAATAATATTAGATA
AAACTGGACAGTTTTATCTCACACCAGTTCTATGTCATTTAATGTTAGAAATAGTTCACA
TTATTAAGAAGCTATTTTAAAACAGCTATTTTTTTTGAAAAGTTGCATGTATTTATATCT
TTTCTGGGTAATTTTCTTGTTAATGTCTTATGATAGATGCTTGTCACATGAAGACTAAAC
TTGGATCTTTGGCATATTCCATATTCTATAGATAGATTGTGATATTTGTAGCTCGTACTA
GTGACTTTCAGGCCTAATGTCTCCACTTGGATTAACATTCTTTGATATCCTTTCTCATCT
CTTTCAGAGACT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               346-609, gnl|bosTau2|chr29 (40538374-40538111)
               

               
               346-609, gnl|Hg17|chr4 (107320712-107320452)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               346-609, gnl|bosTau2|chr29 (40538374-40538111)
               

               
               346-609, gnl|Hg17|chr4 (107320712-107320452)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

	346-609, gnl\|bosTau2\|chr29 (40538374-40538111)
	346-609, gnl\|Hg17\|chr4 (107320712-107320452)