Non-Coding RNA Search

Ss1.1-rret27_b3.5

Sequence:


               
               ACTAACTGGTAAGATATTTTTTTTTTCAGGAGGAAGAATAGTATCTTCTTCCTTAAATTT
CTGCCCATTATTTTTGAAGTTGTTGCCATGTTTCTTTGCCTGCATCATGTGAGGACTAAC
TAGCAGGAGAGAGACTTTACTGACGTGCTGTCTTCCTAGGTGCTACTTTGGCAGAACTAA
GTGGTCAGTTTCTTTTGGTTCCTTACTGTGTCTGTACCATTTGGCTAGCCGTAAAATAAC
CAATTAAACAAAATTCCGCACTGGAACAGTGTTGACATAATAGTATACACACACATTAAA
AAAATATTTTAATTTAAACTTGAGGAAGTAACATAAAAGGGAAAAATACAAGAAAGGGAT
AAAAGTGATAGAGTCCCGCAGCCCTCGTCCCCAAACTTTAACCAAAACCAACATAGGTCC
TAATAGCCTTTAACATCACTAATAAGCAAGGTGTAGACACCTCGATTTTTAAACACATAC
ACACCTAGAAGACAAATGCTCTGTGGATGAATCGTGGAAAATGTACAGATACCATCTTGT
TGAACCTTTCATTCAGTGCTATTTACATGATAGACTATTTAAGTGCTAATTATTTTCTTT
TGCTGATTTATGGTACTGTGACATAGGATGCAAGTTGTACAGTGAAATAAGTTATTAAAG
CATGTGTACACATTGTTATAAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAACTGGTAAGATATTTTTTTTTTCAGGAGGAAGAATAGTATCTTCTTCCTTAAATTT
CTGCCCATTATTTTTGAAGTTGTTGCCATGTTTCTTTGCCTGCATCATGTGAGGACTAAC
TAGCAGGAGAGAGACTTTACTGACGTGCTGTCTTCCTAGGTGCTACTTTGGCAGAACTAA
GTGGTCAGTTTCTTTTGGTTCCTTACTGTGTCTGTACCATTTGGCTAGCCGTAAAATAAC
CAATTAAACAAAATTCCGCACTGGAACAGTGTTGACATAATAGTATACACACACATTAAA
AAAATATTTTAATTTAAACTTGAGGAAGTAACATAAAAGGGAAAAATACAAGAAAGGGAT
AAAAGTGATAGAGTCCCGCAGCCCTCGTCCCCAAACTTTAACCAAAACCAACATAGGTCC
TAATAGCCTTTAACATCACTAATAAGCAAGGTGTAGACACCTCGATTTTTAAACACATAC
ACACCTAGAAGACAAATGCTCTGTGGATGAATCGTGGAAAATGTACAGATACCATCTTGT
TGAACCTTTCATTCAGTGCTATTTACATGATAGACTATTTAAGTGCTAATTATTTTCTTT
TGCTGATTTATGGTACTGTGACATAGGATGCAAGTTGTACAGTGAAATAAGTTATTAAAG
CATGTGTACACATTGTTATAAGTC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-684, gnl|bosTau2|chr8 (10073711-10074381)
               

               
               1-684, gnl|Hg17|chr9 (27537282-27536590)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr8 (10073711-10074381)
               

               
               1-684, gnl|Hg17|chr9 (27537282-27536590)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1-684, gnl\|bosTau2\|chr8 (10073711-10074381)
	1-684, gnl\|Hg17\|chr9 (27537282-27536590)

	fce (0.271592)
	mgp (0.230681)
	fco (0.157208)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	pgl (0.118483)