Non-Coding RNA Search

Ss1.1-rret27_f18.5

Sequence:


               
               TTACCCTGATGAGGCACTGGGATTTCCCCTAAGTCTGCTGAATTATTAGATACTAATTAA
TCAAAGCCACCACAATTTGAGATAAACTGTTTCAGCATAATGAGACACCCTTACACTGAG
GAAAATGTAGGAGAGAAGCAAAAGGAAGCCAGCCATCGCAGGTGCCAAAGAGGCCGCTGT
TGGTTTGATGCTTTATGAAATTTTGGGAGGTTGCATTGAAGCACTTTATAAAACCAGTTT
TTGAGAAATTCTAGAAGCTGGTTTGGAACTGCATAGCTCTGTCAAACCAGATGAAAACCA
GAAAAGGATGCTATGAACCTGGTGATATTACCAGCAACCCCGTGAGCCTTTGGGTCACCA
TAAGGAGTTAGAATAATAGACCCCATTCAAATGAACAGGCAAAGCTAATCTCACTGGAGT
TCTCTTCATTCAAATCCTTGTTCTGCCTGGCGTATATTAGGGATCCGAGAATGTGTGCAC
AAGGGGCCAGGTTTCAGGTTATGTCATGTTGGTATAAGCTCTTTCTGAATGTAAAGCTAT
TTTCACTGTCATTTCTAACAATCCCATAGGTTTGTGTATATTGTAAAAATGTTGAATAAG
GACATAATTGTCTAAATTTCATAGTGTTTTATTTTGAGGTGAGTTTTGTTACAGTTTATA
AAAGATATTTTCCTATTTAGACCTCAGGGCTATTTGGAGACCTACAAATAAATGTGACCC
CAGCAGTTTCAATTCTTGACATCTAAAAGATTAGTCATCTTTAAGGGAAATAGGATTATT
CAGCAGAAAGAATGTGTCTTTTCCTTTTAACTTCTAACAAACTATGTATCTAAAGTTTAA
ATGTACAGCAAAAAGGGATACAGTCATGTAAAAATGTGGGAAAATTGTGGCTACAGAATT
AAAAATCACCTGTGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCCTGATGAGGCACTGGGATTTCCCCTAAGTCTGCTGAATTATTAGATACTAATTAA
TCAAAGCCACCACAATTTGAGATAAACTGTTTCAGCATAATGAGACACCCTTACACTGAG
GAAAATGTAGGAGAGAAGCAAAAGGAAGCCAGCCATCGCAGGTGCCAAAGAGGCCGCTGT
TGGTTTGATGCTTTATGAAATTTTGGGAGGTTGCATTGAAGCACTTTATAAAACCAGTTT
TTGAGAAATTCTAGAAGCTGGTTTGGAACTGCATAGCTCTGTCAAACCAGATGAAAACCA
GAAAAGGATGCTATGAACCTGGTGATATTACCAGCAACCCCGTGAGCCTTTGGGTCACCA
TAAGGAGTTAGAATAATAGACCCCATTCAAATGAACAGGCAAAGCTAATCTCACTGGAGT
TCTCTTCATTCAAATCCTTGTTCTGCCTGGCGTATATTAGGGATCCGAGAATGTGTGCAC
AAGGGGCCAGGTTTCAGGTTATGTCATGTTGGTATAAGCTCTTTCTGAATGTAAAGCTAT
TTTCACTGTCATTTCTAACAATCCCATAGGTTTGTGTATATTGTAAAAATGTTGAATAAG
GACATAATTGTCTAAATTTCATAGTGTTTTATTTTGAGGTGAGTTTTGTTACAGTTTATA
AAAGATATTTTCCTATTTAGACCTCAGGGCTATTTGGAGACCTACAAATAAATGTGACCC
CAGCAGTTTCAATTCTTGACATCTAAAAGATTAGTCATCTTTAAGGGAAATAGGATTATT
CAGCAGAAAGAATGTGTCTTTTCCTTTTAACTTCTAACAAACTATGTATCTAAAGTTTAA
ATGTACAGCAAAAAGGGATACAGTCATGTAAAAATGTGGGAAAATTGTGGCTACAGAATT
AAAAATCACCTGTGAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               562-907, gnl|bosTau2|chr1 (76683518-76683170)
               

               
               562-907, gnl|Hg17|chr5 (10710587-10710913)
               

               
               562-907, gnl|Mm7|chr15 (31403057-31402739)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               562-907, gnl|bosTau2|chr1 (76683518-76683170)
               

               
               562-907, gnl|Hg17|chr5 (10710587-10710913)
               

               
               562-907, gnl|Mm7|chr15 (31403057-31402739)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               bla (0.373042)
               

               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

	562-907, gnl\|bosTau2\|chr1 (76683518-76683170)
	562-907, gnl\|Hg17\|chr5 (10710587-10710913)
	562-907, gnl\|Mm7\|chr15 (31403057-31402739)

	bla (0.373042)
	vin (0.332557)
	ret (0.257467)
	aor (0.195274)
	ldo (0.194005)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	ste (0.135208)
	lyg (0.133103)