Non-Coding RNA Search

Ss1.1-rret27_m19.5

Sequence:


               
               TTGAACATGGCCTTTGAAAGGCCTTTATGATTCAGGACTCTGGTTAAAAATGCTGACACC
AGCACCGGAGAGAAAAAGTCTTGACCTATCAAATGTTGGCCCCTTCTGTTGAAAATTTTT
TGTTTCAGCAATTATTAGTAGTTCTCTACTTACTTTGTTCACAGCTGTTTTAACAAGTAA
AAGATGCTCAGTGAACCTGAATGCAAAACACTCAATTCATAATAAAGGGGAAGAAGAGGC
TCCACTTAGAAGTCTCTGGGAAACAGACTTCTCTCTTACCTTGTGATCTGTTCTTGGATA
GCTTCAGTGTTGGCCTCTGCAAAAAGGTACAGCATTGTGCAGCTGAAGTAGTGAGTGTGG
CTATTTGGGTACCGCAGCTGATTTGCAATTGCATTCAAGAAGAGATACCGACCTAGAAAT
TAAATTTCAGCTTAACAAAAATTTGCTCTTAAAGACCAGTATCAGAGGAAAATCATTTAC
TTGTTTTTCACATTAGAAAAATTTTAGTGTAAAGAAAATTATTTTAAAAAATAAGCATTG
TCCCAAAAAAACTTAATGAAGAGGTGTCATTATTTTACATTCTGCTGGATTCTGATTTCT
GTCCTTATGTTCCCATCTGTTCCAGTGTGGTATTTCATGTGGCCTCTGGAAAGCTCCACT
GTACACTTGTGACAAAACTGAGTGTGAAAACAGGCAAATTTATTACTATGAAAATAGTTC
TGACTTCACAGCTGTTCTGTAAAGGTCTTAGGGATTACCCCCAAGGGGTATACTTGAGAA
GTGCTAGTTGAAAACTATATTGTAATAAAATTACCTTAATTGGACTTAGTTGTCTGCCTC
TGCTTATAATTAGGTTTGTAAGGCTATTAGAATGAGCTTTAACACTTTCTTAAAGCCTAC
CCTCTTTTTTTGTTGTGCTCTGGACATAATGGTATTCAATTATGTTAAACCTTGACTTTA
AGCTGTCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAACATGGCCTTTGAAAGGCCTTTATGATTCAGGACTCTGGTTAAAAATGCTGACACC
AGCACCGGAGAGAAAAAGTCTTGACCTATCAAATGTTGGCCCCTTCTGTTGAAAATTTTT
TGTTTCAGCAATTATTAGTAGTTCTCTACTTACTTTGTTCACAGCTGTTTTAACAAGTAA
AAGATGCTCAGTGAACCTGAATGCAAAACACTCAATTCATAATAAAGGGGAAGAAGAGGC
TCCACTTAGAAGTCTCTGGGAAACAGACTTCTCTCTTACCTTGTGATCTGTTCTTGGATA
GCTTCAGTGTTGGCCTCTGCAAAAAGGTACAGCATTGTGCAGCTGAAGTAGTGAGTGTGG
CTATTTGGGTACCGCAGCTGATTTGCAATTGCATTCAAGAAGAGATACCGACCTAGAAAT
TAAATTTCAGCTTAACAAAAATTTGCTCTTAAAGACCAGTATCAGAGGAAAATCATTTAC
TTGTTTTTCACATTAGAAAAATTTTAGTGTAAAGAAAATTATTTTAAAAAATAAGCATTG
TCCCAAAAAAACTTAATGAAGAGGTGTCATTATTTTACATTCTGCTGGATTCTGATTTCT
GTCCTTATGTTCCCATCTGTTCCAGTGTGGTATTTCATGTGGCCTCTGGAAAGCTCCACT
GTACACTTGTGACAAAACTGAGTGTGAAAACAGGCAAATTTATTACTATGAAAATAGTTC
TGACTTCACAGCTGTTCTGTAAAGGTCTTAGGGATTACCCCCAAGGGGTATACTTGAGAA
GTGCTAGTTGAAAACTATATTGTAATAAAATTACCTTAATTGGACTTAGTTGTCTGCCTC
TGCTTATAATTAGGTTTGTAAGGCTATTAGAATGAGCTTTAACACTTTCTTAAAGCCTAC
CCTCTTTTTTTGTTGTGCTCTGGACATAATGGTATTCAATTATGTTAAACCTTGACTTTA
AGCTGTCTCAAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-145, gnl|bosTau2|chr18 (23204695-23204841)
               

               
               1-145, gnl|Hg17|chr16 (57114113-57114250)
               


               
               169-464, gnl|bosTau2|chr18 (23205163-23205456)
               

               
               169-464, gnl|Hg17|chr16 (57114676-57114966)
               

               
               169-464, gnl|Mm7|chr8 (94310403-94310641)
               


               
               495-767, gnl|bosTau2|chr18 (23205613-23205902)
               

               
               495-767, gnl|Hg17|chr16 (57115124-57115447)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr18 (23204695-23204841)
               

               
               1-145, gnl|Hg17|chr16 (57114113-57114250)
               


               
               169-464, gnl|bosTau2|chr18 (23205163-23205456)
               

               
               169-464, gnl|Hg17|chr16 (57114676-57114966)
               

               
               169-464, gnl|Mm7|chr8 (94310403-94310641)
               


               
               495-767, gnl|bosTau2|chr18 (23205613-23205902)
               

               
               495-767, gnl|Hg17|chr16 (57115124-57115447)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-145, gnl\|bosTau2\|chr18 (23204695-23204841)
	1-145, gnl\|Hg17\|chr16 (57114113-57114250)

	169-464, gnl\|bosTau2\|chr18 (23205163-23205456)
	169-464, gnl\|Hg17\|chr16 (57114676-57114966)
	169-464, gnl\|Mm7\|chr8 (94310403-94310641)

	495-767, gnl\|bosTau2\|chr18 (23205613-23205902)
	495-767, gnl\|Hg17\|chr16 (57115124-57115447)

	amn (0.417711)
	sag (0.182715)
	csk (0.140746)
	nca (0.136874)
	ret (0.128733)
	thg (0.126791)
	spc (0.113366)