Non-Coding RNA Search

Ss1.1-rret28_b2.5

Sequence:


               
               TGGGAACTTCCGTATGCCATGGGTGCAGTCATAAAAAGGGGAAAAAAAAGCAAGTGTGCC
ATTTTTCTCAATAGTAATTTTTCTAAGCATGATGAAAGTAGTGTTAGAAGCTAAGAACTG
TAAGCCATGTGCTTTGAATCACTACAAGTATAGTGTTTAAACACCAAATTATATTAATGA
CTAGGCATTTAAGAAACAGACTATTTTCTTTGACCTGATCTCCAGAAAAGCTTTCACACC
TGCTTTTGAGGTATCATCACCATGACATCTACCTCTGGCCCTACCATTTAGAGCAGAGAA
TGATTTTTTTGATTTTCAAAAGAAGTTATCACACTAAAGATTCAAGGCATACAAATTCAA
GAAATCAAGAAGTTTTGTTTTCTCTCAGAGCACCAAAACAACAAAATTTTAATCTCGTAC
TTGGATAACTAAAACACACCAAATTATCTTATCACAATTCATATTTCATCAAATTTCAGC
AATTGTACAAAACAATCTTTATTATGTTCCATTTTAACTGGGATAAATGTTTTTTTACAG
TAAATTCACTAGAGAAAGGTCTTGGTTACATTAAGATTTGCTAATAACGAACTCCTTTGT
TCACAAGGTTAAGTTAATTTAGCATAAGAAAGTACATTAACATTATTAAACACTTCTATT
TTCCTAGCATAATATATTAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAACTTCCGTATGCCATGGGTGCAGTCATAAAAAGGGGAAAAAAAAGCAAGTGTGCC
ATTTTTCTCAATAGTAATTTTTCTAAGCATGATGAAAGTAGTGTTAGAAGCTAAGAACTG
TAAGCCATGTGCTTTGAATCACTACAAGTATAGTGTTTAAACACCAAATTATATTAATGA
CTAGGCATTTAAGAAACAGACTATTTTCTTTGACCTGATCTCCAGAAAAGCTTTCACACC
TGCTTTTGAGGTATCATCACCATGACATCTACCTCTGGCCCTACCATTTAGAGCAGAGAA
TGATTTTTTTGATTTTCAAAAGAAGTTATCACACTAAAGATTCAAGGCATACAAATTCAA
GAAATCAAGAAGTTTTGTTTTCTCTCAGAGCACCAAAACAACAAAATTTTAATCTCGTAC
TTGGATAACTAAAACACACCAAATTATCTTATCACAATTCATATTTCATCAAATTTCAGC
AATTGTACAAAACAATCTTTATTATGTTCCATTTTAACTGGGATAAATGTTTTTTTACAG
TAAATTCACTAGAGAAAGGTCTTGGTTACATTAAGATTTGCTAATAACGAACTCCTTTGT
TCACAAGGTTAAGTTAATTTAGCATAAGAAAGTACATTAACATTATTAAACACTTCTATT
TTCCTAGCATAATATATTAAAAAC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               43-381, gnl|bosTau2|chr8 (46566927-46567280)
               

               
               43-381, gnl|Hg17|chr9 (92256704-92256357)
               


               
               453-684, gnl|bosTau2|chr8 (46568235-46568464)
               

               
               453-684, gnl|Hg17|chr9 (92256295-92256081)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-381, gnl|bosTau2|chr8 (46566927-46567280)
               

               
               43-381, gnl|Hg17|chr9 (92256704-92256357)
               


               
               453-684, gnl|bosTau2|chr8 (46568235-46568464)
               

               
               453-684, gnl|Hg17|chr9 (92256295-92256081)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.257467)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)

	43-381, gnl\|bosTau2\|chr8 (46566927-46567280)
	43-381, gnl\|Hg17\|chr9 (92256704-92256357)

	453-684, gnl\|bosTau2\|chr8 (46568235-46568464)
	453-684, gnl\|Hg17\|chr9 (92256295-92256081)