Non-Coding RNA Search

Ss1.1-rret28_d4.5

Sequence:


               
               GTATCCTTGCCTGACCATAATAATTTAGTTTGGGTGTGGTTGTCTGCTTTGAGATGCCTT
ACTAGAATATGTCAGACTCTGCTCTAAAGCATTCCATGTATCTGCTAGGACAATAAGTTG
CCTCTCTTGGATGTATGCTCTAGATCCAGAAGCAAAACTGATGTCGCTTTCACTGTTAAG
GTTGCATTTTAGTGCAGTGATTATTTTATATTAGAGAATAAAATTATGAAAAACCAAGGG
AGAATTTAGAACCCTTCATTTAATGGCATGGCAAGCTTTTAAACTACTTTTATTATTTCA
TTAGAACAATGTCTCTGATAAAGGATATAGCTAAAATATGCCAGCCAAAACTGTATGAAA
TTGGGACTGTTTCCTACAGTTTTCTCTAAATGTTATACAGGGGTTTACCATCCATGTATG
CTGTTGGGCCTATGTGCCAGTCACCATTTTGGAAATCTGTGTTCTGAGGCTACATAAATG
ACAATAGTGTCATGGGATTAAAACCAATTAACTGTGAATTGTGAAACTGAAATTTCTCTT
TTGGTTTTATTTTCTTCAGTATATTGAATATAGAAACTGAAAGTTATTTAAAATTTACAC
TGCTTATGTTGATGGCTCATTTTGGCTGTGTATCCTCACTTATGTACTGATTTCTGATAA
AGGCTTGATGTCATTATAACAGTCATTTTGTGTTCAATTTAATAAAAGAGTTTCTGAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATCCTTGCCTGACCATAATAATTTAGTTTGGGTGTGGTTGTCTGCTTTGAGATGCCTT
ACTAGAATATGTCAGACTCTGCTCTAAAGCATTCCATGTATCTGCTAGGACAATAAGTTG
CCTCTCTTGGATGTATGCTCTAGATCCAGAAGCAAAACTGATGTCGCTTTCACTGTTAAG
GTTGCATTTTAGTGCAGTGATTATTTTATATTAGAGAATAAAATTATGAAAAACCAAGGG
AGAATTTAGAACCCTTCATTTAATGGCATGGCAAGCTTTTAAACTACTTTTATTATTTCA
TTAGAACAATGTCTCTGATAAAGGATATAGCTAAAATATGCCAGCCAAAACTGTATGAAA
TTGGGACTGTTTCCTACAGTTTTCTCTAAATGTTATACAGGGGTTTACCATCCATGTATG
CTGTTGGGCCTATGTGCCAGTCACCATTTTGGAAATCTGTGTTCTGAGGCTACATAAATG
ACAATAGTGTCATGGGATTAAAACCAATTAACTGTGAATTGTGAAACTGAAATTTCTCTT
TTGGTTTTATTTTCTTCAGTATATTGAATATAGAAACTGAAAGTTATTTAAAATTTACAC
TGCTTATGTTGATGGCTCATTTTGGCTGTGTATCCTCACTTATGTACTGATTTCTGATAA
AGGCTTGATGTCATTATAACAGTCATTTTGTGTTCAATTTAATAAAAGAGTTTCTGAGTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-720, gnl|bosTau2|chr1 (57028764-57028049)
               

               
               2-720, gnl|Hg17|chr3 (180218441-180217724)
               

               
               2-720, gnl|Mm7|chr3 (32144243-32143570)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-720, gnl|bosTau2|chr1 (57028764-57028049)
               

               
               2-720, gnl|Hg17|chr3 (180218441-180217724)
               

               
               2-720, gnl|Mm7|chr3 (32144243-32143570)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tra (0.246184)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               ret (0.128733)

	2-720, gnl\|bosTau2\|chr1 (57028764-57028049)
	2-720, gnl\|Hg17\|chr3 (180218441-180217724)
	2-720, gnl\|Mm7\|chr3 (32144243-32143570)