Non-Coding RNA Search

Ss1.1-rret28_f11.5

Sequence:


               
               TAGAAAATAATTCAATATCTTCTATACCAGAAAATTACTTCAATGAACTTCCAAAACTTC
ATGCTCTAAGAATGTCACACAACAAACTACAAGACATCCCGTGTAATATTTTTAATCTTT
CCAACCTTGTAGAGCTCAATGTTGGACACAACAAACTGAAGCAAGCATTCTATATTCCAA
GAAATTTAGAACACTTATACCTAGAAAATAATGAAATCGAAAGTATGTAATATTTCATTA
TTTTTAAAAGGCAGAAAGAACAGCATTTTACCTTTTGAGGAATAAATCTTTAAAAATCTA
TGCTTTACACACTGCTAAAAATGGTTGAAGCTAGTTAGGGAAATGGCAGAAATTGTCCCC
AGAGAAAGGTGTACTCTAAAGTTTATAGTCTTTTGTCTTAAATATTACCAACTTTAACTT
TTGAGAATTAGTACTGTAGAGTATGTAAAGAAATATGAGATCTTGAGTAGTGGAACTATT
GGTGATTTTCGCTTTTCTCTTTTTGAGATTGTTTCTACTAAGAATTTTTTACTTAAATAA
ATTATTTAATACTTAAATAATTACTTCAGTCTAACAACTGAGCTATTTCAGCCACCTGTT
AAAATTCATTCTTAGCTTTATTCATTTTATTATTTGATTACTGTAAAATTAATTAAACCT
AATTATACTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAAATAATTCAATATCTTCTATACCAGAAAATTACTTCAATGAACTTCCAAAACTTC
ATGCTCTAAGAATGTCACACAACAAACTACAAGACATCCCGTGTAATATTTTTAATCTTT
CCAACCTTGTAGAGCTCAATGTTGGACACAACAAACTGAAGCAAGCATTCTATATTCCAA
GAAATTTAGAACACTTATACCTAGAAAATAATGAAATCGAAAGTATGTAATATTTCATTA
TTTTTAAAAGGCAGAAAGAACAGCATTTTACCTTTTGAGGAATAAATCTTTAAAAATCTA
TGCTTTACACACTGCTAAAAATGGTTGAAGCTAGTTAGGGAAATGGCAGAAATTGTCCCC
AGAGAAAGGTGTACTCTAAAGTTTATAGTCTTTTGTCTTAAATATTACCAACTTTAACTT
TTGAGAATTAGTACTGTAGAGTATGTAAAGAAATATGAGATCTTGAGTAGTGGAACTATT
GGTGATTTTCGCTTTTCTCTTTTTGAGATTGTTTCTACTAAGAATTTTTTACTTAAATAA
ATTATTTAATACTTAAATAATTACTTCAGTCTAACAACTGAGCTATTTCAGCCACCTGTT
AAAATTCATTCTTAGCTTTATTCATTTTATTATTTGATTACTGTAAAATTAATTAAACCT
AATTATACTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               127-246, - strand, RNAz p=0.857733

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-246, - strand, RNAz p=0.857733

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-246, gnl|bosTau2|chr28 (16159385-16159630)
               

               
               1-246, gnl|Hg17|chr9 (92258677-92258435)
               

               
               1-246, gnl|Mm7|chr13 (49074071-49074305)
               


               
               432-662, gnl|bosTau2|chr8 (46566032-46566268)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr28 (16159385-16159630)
               

               
               1-246, gnl|Hg17|chr9 (92258677-92258435)
               

               
               1-246, gnl|Mm7|chr13 (49074071-49074305)
               


               
               432-662, gnl|bosTau2|chr8 (46566032-46566268)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.299715)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               ret (0.128733)

	1-246, gnl\|bosTau2\|chr28 (16159385-16159630)
	1-246, gnl\|Hg17\|chr9 (92258677-92258435)
	1-246, gnl\|Mm7\|chr13 (49074071-49074305)

	432-662, gnl\|bosTau2\|chr8 (46566032-46566268)