Non-Coding RNA Search

Ss1.1-rret28_h1.5

Sequence:


               
               GAGATTCTCGTACACCCCAATGGGACAACGTCTGTCACCAGCATCCTCCAGATCAAAGAC
CCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGGACTGTGACT
GACTACAGGGAAACTGTGAACAAAGGCTTTTGGTTTTCAGTTCCCCTGTTGTTAAGTATC
GTTTCTCTGGTGATTCTTCTGGTCTTAATCTCAATCTTACTATACTGGAAACGTCGTCGA
AACCAAGACCGAGAGCCCTAGAGGAGTCACACAGAGCCCTGAAAGTTATTCCCTGGTCTA
CTTGAATCTGACTTAGGAAAGCAGGAGGAAAAAAGGGTCATTCTCCATGGAACCTAAAGA
AGCAAAAGAAGTGGGAGTCAAGGCCTAAGAATTTCAAAACTTTATATCATCTAGGCTACC
TAGTGCTTATGTGAGTTCCAAGAGGAAGTTACTTTACCTGTCAGGTCTGTTGTAGGACTT
GATTTTGTGCTGTTGTGAGGCTACTGGACTTAGAATCAGGAGCCACTGCTCAGAGGCTGA
CTTTGACTCTGACTGGTGGCAACTCGAGTTTAATCACTATGTCAATGAGCTTCCCCGTTT
GCATCCAGAAAATTAAGGAGTTGGACCAGATAATTTGCCATTCTGCTCAAAAAAACTATC
TCATTCCAGGAAAAAAGAATAAACAAAGAGAAAAGAAATGGAAAAGAGAGAGAACACAGG
AAGGTTAAGGACCAAAGAACTTTTCTGAGACAAACTTTTGCCTTTCTGTTGATGTTCCAT
TTCTTCTTCCCTTCTTCTTTGGTCCTTAAGTCTATTTCCTCATTACTTGGCGTTTAGTCC
ATTCCCTGCTTACCGTTTTGCTAATAAGCATTCTTTCTAGAACCCTCAGTTTCACTGCTG
TTCTTCATGTACTTCTGTGATGTTTACCGCGATGGAAATAGAACTGAATTTATTGTGAAA
TAATATTGACTTTACTTATCTGTTTTTATAGCAGAGTAAATATTGTTAGTTGTAGCTAGC
AGCTCACATTTTTAAAAAAGCATGCGTATCTCATCCATTTGTCCCATAATGTGACCTAGC
CGTATTTTAGTCATTCTAAATTCAGCCATTATAAATCACATAATGAAAACACATTATGAA
AACAGGCACTTAGACAGTTTTCTGAATAGCAGTCCCCAGTTGTGTCTCCCAGCTTCTTTT
CTCATGAGTCTCACAGTAGCAGAGGAAGCATGTATGGATGTATAAATCTGTTTGTTGTAA
ACGTATTGTTTTAACTAGTGAAACGGTTTTCAACTCTTAAATAATCATAAGACCAAGTTA
GTGGCTTTGTCCGTGTCTTTTGCTTTCTTGTCTATCAGTGACGTAAGAACTAAAACTTGT
TTTCATTGTTGAATTGAATATTTATATATTTAGTAAGCTTTTCATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATTCTCGTACACCCCAATGGGACAACGTCTGTCACCAGCATCCTCCAGATCAAAGAC
CCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGGACTGTGACT
GACTACAGGGAAACTGTGAACAAAGGCTTTTGGTTTTCAGTTCCCCTGTTGTTAAGTATC
GTTTCTCTGGTGATTCTTCTGGTCTTAATCTCAATCTTACTATACTGGAAACGTCGTCGA
AACCAAGACCGAGAGCCCTAGAGGAGTCACACAGAGCCCTGAAAGTTATTCCCTGGTCTA
CTTGAATCTGACTTAGGAAAGCAGGAGGAAAAAAGGGTCATTCTCCATGGAACCTAAAGA
AGCAAAAGAAGTGGGAGTCAAGGCCTAAGAATTTCAAAACTTTATATCATCTAGGCTACC
TAGTGCTTATGTGAGTTCCAAGAGGAAGTTACTTTACCTGTCAGGTCTGTTGTAGGACTT
GATTTTGTGCTGTTGTGAGGCTACTGGACTTAGAATCAGGAGCCACTGCTCAGAGGCTGA
CTTTGACTCTGACTGGTGGCAACTCGAGTTTAATCACTATGTCAATGAGCTTCCCCGTTT
GCATCCAGAAAATTAAGGAGTTGGACCAGATAATTTGCCATTCTGCTCAAAAAAACTATC
TCATTCCAGGAAAAAAGAATAAACAAAGAGAAAAGAAATGGAAAAGAGAGAGAACACAGG
AAGGTTAAGGACCAAAGAACTTTTCTGAGACAAACTTTTGCCTTTCTGTTGATGTTCCAT
TTCTTCTTCCCTTCTTCTTTGGTCCTTAAGTCTATTTCCTCATTACTTGGCGTTTAGTCC
ATTCCCTGCTTACCGTTTTGCTAATAAGCATTCTTTCTAGAACCCTCAGTTTCACTGCTG
TTCTTCATGTACTTCTGTGATGTTTACCGCGATGGAAATAGAACTGAATTTATTGTGAAA
TAATATTGACTTTACTTATCTGTTTTTATAGCAGAGTAAATATTGTTAGTTGTAGCTAGC
AGCTCACATTTTTAAAAAAGCATGCGTATCTCATCCATTTGTCCCATAATGTGACCTAGC
CGTATTTTAGTCATTCTAAATTCAGCCATTATAAATCACATAATGAAAACACATTATGAA
AACAGGCACTTAGACAGTTTTCTGAATAGCAGTCCCCAGTTGTGTCTCCCAGCTTCTTTT
CTCATGAGTCTCACAGTAGCAGAGGAAGCATGTATGGATGTATAAATCTGTTTGTTGTAA
ACGTATTGTTTTAACTAGTGAAACGGTTTTCAACTCTTAAATAATCATAAGACCAAGTTA
GTGGCTTTGTCCGTGTCTTTTGCTTTCTTGTCTATCAGTGACGTAAGAACTAAAACTTGT
TTTCATTGTTGAATTGAATATTTATATATTTAGTAAGCTTTTCATATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               25-127, - strand, RNAz p=0.852222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-127, - strand, RNAz p=0.852222

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1428, gnl|bosTau2|chr3 (33095684-33097151)
               

               
               1-1428, gnl|Hg17|chr3 (113549223-113564260)
               

               
               1-1428, gnl|Mm7|chr16 (45172263-45159773)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1428, gnl|bosTau2|chr3 (33095684-33097151)
               

               
               1-1428, gnl|Hg17|chr3 (113549223-113564260)
               

               
               1-1428, gnl|Mm7|chr16 (45172263-45159773)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               elu (0.385356)
               

               
               gul (0.355177)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-1428, gnl\|bosTau2\|chr3 (33095684-33097151)
	1-1428, gnl\|Hg17\|chr3 (113549223-113564260)
	1-1428, gnl\|Mm7\|chr16 (45172263-45159773)

	elu (0.385356)
	gul (0.355177)
	ret (0.257467)
	cbe (0.239234)
	sto (0.179824)
	fty (0.17584)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	nca (0.136874)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)